Training materials
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e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis Pathogens detection Phylogenetic tree cyoa microgalaxy -
e-learning
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
e-learning
Antibiotic resistance detection
• beginnerMetagenomics Microbial ecology Metagenomic sequencing Public health and epidemiology Microbiology Infectious disease Sequence analysis Antimicrobial resistance Microbiome amr assembly microgalaxy nanopore plasmids -
bioinformaticsdotca/IDE_2024
Public health and epidemiology Genomics Epidemiology
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alliblk/genepi-book
Public health and epidemiology Genomics Epidemiology
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bioinformatics-ca/EPI_2021
Public health and epidemiology Genomics Epidemiology
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bioinformaticsdotca/IDE_2023
Public health and epidemiology Epidemiology
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bioinformatics-ca/IDE_2021
Public health and epidemiology Epidemiology
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cmirzayi/EpiForBioWorkshop2020
Public health and epidemiology Epidemiology
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e-learning
M. tuberculosis Variant Analysis
•• intermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote tuberculosis
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