e-learning
Antibiotic resistance detection
Abstract
Overview
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- How do I assemble a genome with Nanopore data?
- How do I get more information about the structure of the genomes?
- How do I get more information about the antimicrobial resistance genes?
Learning Objectives
- Perform Quality control on your reads
- Assemble a genome with Minimap2/Miniasm/Racon
- Determine the structure of the genome(s)
- Scan for antimicrobial resistance genes with Staramr
Licence: Creative Commons Attribution 4.0 International
Keywords: Microbiome, amr, assembly, microgalaxy, nanopore, plasmids
Target audience: Students
Resource type: e-learning
Version: 4
Status: Active
Prerequisites:
Introduction to Galaxy Analyses
Learning objectives:
- Perform Quality control on your reads
- Assemble a genome with Minimap2/Miniasm/Racon
- Determine the structure of the genome(s)
- Scan for antimicrobial resistance genes with Staramr
Date modified: 2024-06-14
Date published: 2019-06-25
Scientific topics: Metagenomics, Microbial ecology, Metagenomic sequencing, Public health and epidemiology, Microbiology, Infectious disease, Sequence analysis, Antimicrobial resistance
External resources:
Activity log
