e-learning
Identification of AMR genes in an assembled bacterial genome
Abstract
Antimicrobial resistance (AMR) is a global phenomenon with no geographical or species boundaries, which poses an important threat to human, animal and environmental health. It is a complex and growing problem that compromises our ability to treat bacterial infections.
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- Which resistance genes are on a bacterial genome?
- Where are the genes located on the genome?
Learning Objectives
- Run a series of tool to assess the presence of antimicrobial resistance genes (ARG)
- Get information about ARGs
- Visualize the ARGs and plasmid genes in their genomic context
Licence: Creative Commons Attribution 4.0 International
Keywords: Genome Annotation, amr, gmod, illumina, jbrowse1, microgalaxy, one-health
Target audience: Students
Resource type: e-learning
Version: 7
Status: Active
Prerequisites:
Introduction to Galaxy Analyses
Learning objectives:
- Run a series of tool to assess the presence of antimicrobial resistance genes (ARG)
- Get information about ARGs
- Visualize the ARGs and plasmid genes in their genomic context
Date modified: 2024-10-15
Date published: 2024-01-23
Contributors: Bazante Sanders, Helena Rasche, Miaomiao Zhou, Saskia Hiltemann
Scientific topics: Whole genome sequencing, Public health and epidemiology, Genomics, Microbiology, Sequence analysis, Infectious disease, Antimicrobial resistance
Activity log
