EMBL-EBI
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PhenoMeNal: accessing metabolomics workflows in Galaxy
• beginnerMetabolomics Chemical biology Galaxy -
Video
A common framework for designing portable federated pipelines
•• intermediateData architecture, analysis and design data access federated data analysis -
Installation instructions, Manual
How to use Common Workflow Language
• beginnerWorkflows commonwl common workflow language CWL eLearning EeLP -
Recorded webinar, Slidedeck
Europe PMC API workshop: Part two
API Literature search Literature database search Europe PMC Annotations
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Online material, Recording, hands-on tutorial
MaBoSS: a tool for modelling biological systems
• beginnerMathematical modelling cancer Signalling boolean modelling logical modelling -
Recorded webinar
Exploring metabolite metabolism using the Enzyme Portal
Enzymes Metabolomics
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Training materials, Video
GA4GH Passports and ELIXIR AAI
•• intermediateAAI GA4GH Passports Auhtorisation -
e-learning
Bioinformatics for the terrified: An introduction to the science of bioinformatics
Bioinformatics Ontology and terminology Introduction Databases Metadata Controlled vocabularies
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Video
Status Update Code of Conduct: Teaming up & Talking about it
•• intermediateGDPR Healthcare research data harmonization -
Webinar
EBI Metagenomics: analysing and exploring metagenomics data
Metagenomics MGnify Sequence Analysis Microbiology
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e-learning
2024 highlights: A year of on-demand training
Bioinformatics Introduction
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Video
Useful ontologies for harmonizing cohort data
• beginnerData integration and warehousing Data management Ontology and terminology Ontologies Cohort data data annotation -
Video
Applying data standards to the harmonization of COVID-19 datasets from different sources
• beginnerData integration and warehousing Data integration Standards Standardised vocabulary data harmonization Ontologies -
Video
Annotating data using next generation biobanking ontology (NGBO)
• beginnerData integration and warehousing Ontology and terminology Standards Ontologies Data Integration data harmonization Standardised vocabulary -
Recorded webinar
Exploring ChEMBL Data with the new ChEMBL Interface
Drug discovery
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Video
FAIR software tools
• beginnerSoftware engineering FAIR software tools Software -
Video
Making cohort data FAIR
• beginnerData integration and warehousing Data management FAIR data Cohort data Ontologies Standards -
Video
Introduction to FAIR principles - Open science through FAIR health data networks: dream or reality?
• beginnerData management FAIR data Health data Open science -
Video
Data Gravity in the Life Sciences: Lessons learned from the HCA and other federated data projects
•• intermediateData architecture, analysis and design Cloud computing Data analysis Standards Translational research -
Series of videos
CINECA discovery service catalog
•• intermediateCohort data Standards federated data analysis Beacon queries -
Tutorial
MGnify quick tour
Metagenomics Sequence analysis MGnify Microbiology
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e-learning
Structural volume data
Electron microscopy Protein structure analysis Structural biology Structural bioinformatics Segmentation Volume matching
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Life Sciences Literature Database
Finding the data behind research publications with Europe PMC
Biomedical Literature Data links databases External links
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Life Sciences Literature Database
Discovering scientific evidence using Europe PMC SciLite annotation
Biomedical Literature Annotations Literature search SciLite Protein structure viewer Chemical viewer
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Recorded webinar
Life cell by cell: Introduction to Single Cell Expression Atlas
Gene expression
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Recorded webinar
European Nucleotide Archive: An introduction
Sequencing
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Recorded webinar
Ethics/ELSI considerations - From FAIR to fair data sharing
Data governance
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Recorded webinar
UniProtKB: Increasing our understanding of neurodegenerative disorders through data curation
Neurobiology Function analysis Data curation and archival
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Recorded webinar
A guide to the maintenance of life science data by biocurators
Data curation and archival
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Recorded webinar
A guide to exploring drug-like compounds and their biological targets using ChEMBL
Chemical biology Drug discovery
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FEBS: In Silico Systems Biology: Network Reconstruction, Analysis and Network-based Modelling
No date given
Face-to-face
HDRUK -
EBI - Joint EBI-Wellcome Trust Proteomics Bioinformatics workshop
No date given
Face-to-face
HDRUK -
Using the Ensembl Genome Browser
No date given
Face-to-face
HDRUK -
Workshops and courses
Introduction to RNA-seq and functional interpretation
24 - 28 February 2025
Online
RNA-Seq analysis Function analysis Gene expression profile RNA-Seq Transcriptome assembly Transcriptomics Gene transcripts -
Workshops and courses
Cancer genomics and transcriptomics
12 - 16 May 2025
Online
Oncology Genomics Sequencing Next-generation sequencing SNV analysis CNV analysis CRISPR-Cas9 Long-read RNA-seq -
Workshops and courses
Microscopy data analysis: machine learning and the BioImage Archive
31 March - 4 April 2025
Online
Machine learning Bioimaging Image analysis Bioimage analysis Machine learning models Scientific computing Light microscopy Electron microscopy -
Workshops and courses
Introduction to multi-omics data integration and visualisation
3 - 7 March 2025
United Kingdom
Face-to-face
-
Workshops and courses
Single-cell RNA-seq analysis with Python
17 - 21 February 2025
Online
-
Workshops and courses
Managing a bioinformatics core facility
8 - 10 December 2025
United Kingdom
Face-to-face
Bioinformatics Budgeting Project management Team building Principal investigators Core facility services -
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
17 - 21 November 2025
United Kingdom
Face-to-face
-
Workshops and courses
Structural bioinformatics
27 - 31 October 2025
Online
-
Workshops and courses
Metagenomics bioinformatics at MGnify
6 - 10 October 2025
United Kingdom
Face-to-face
-
Workshops and courses
Proteomics bioinformatics
14 - 18 July 2025
United Kingdom
Face-to-face
-
Workshops and courses
Systems biology: from large datasets to biological insight
7 - 11 July 2025
United Kingdom
Face-to-face
Deep learning Network inference Logic modelling Multi-Omics Factor Analysis Data integration -
Workshops and courses
Data visualisation for biology
24 - 26 June 2025
United Kingdom
Face-to-face
Data visualisation Data exploration User experience Visual analytics -
Workshops and courses
Summer school in bioinformatics
16 - 20 June 2025
United Kingdom
Face-to-face
Protein Data Bank in Europe - Knowledge Base BioModels database BioImage Archive Introduction Data management Genome variation Structural bioinformatics Modelling cell signalling Bioimage analysis -
Workshops and courses
Introduction to metabolomics analysis
20 - 23 May 2025
United Kingdom
Face-to-face
Metabolomics Mass spectrometry data Metabolic network modelling MetaboLights: Metabolomics repository and reference database Galaxy for metabolomics MS Imaging Metabolite identification -
Workshops and courses
Gene-environment interactions in human health and disease
17 - 21 March 2025
United Kingdom
Face-to-face
GWAS study Genotype and phenotype Computational biology European Genome-phenome Archive NHGRI-EBI GWAS Catalog Human ecosystems genes and environment interactions human phenotypes environmental readouts ethics -
Workshops and courses
Methods for infectious disease modelling using genomics
15 - 19 September 2025
United Kingdom
Face-to-face
-
Workshops and courses
Data science for life scientists
16 - 20 June 2025
United Kingdom
Face-to-face
Data science Python Data visualisation Statistics Machine learning -
Workshops and courses
AlphaFold Education Summit
14 - 16 January 2025
United Kingdom
Face-to-face
-
Workshops and courses
Small molecule chemistry: from proteins to pathways
28 November 2024 @ 09:00 - 17:00
Online
Chemical biology Molecular interactions, pathways and networks Protein structure ChEMBL: Bioactive data for drug discovery PDBeChem Reactome pathways database chemical biology small molecules ligands -
Workshops and courses
UniProt
10 October - 11 December 2024
Online
UniProt: The Universal Protein Resource Proteins (proteins) -
Workshops and courses
Calculating polygenic scores with the Polygenic Score Catalog Calculator
4 December 2024 @ 09:00 - 17:00
Online
GWAS study Genetics Polygenic Score Catalog DNA & RNA (dna-rna) polygenic score -
Workshops and courses
Workshop on Artificial Intelligence Competencies: training challenges and needs of research infrastructures and core facilities
25 - 27 February 2025
United Kingdom
Face-to-face
-
Workshops and courses
Uncovering protein function with UniProt
11 December 2024 @ 09:00 - 17:00
Online
UniProt: The Universal Protein Resource Proteins (proteins) -
Workshops and courses
An introduction to EMBL-EBI resources
15 January 2025 @ 09:00 - 17:00
Online
Introduction EMBL-EBI data services
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CINECA PROJECT
CINECA’s aim is to deliver a federated infrastructure for data discovery and sharing of human genetic and phenotypic data for research that is interoperable across continents. CINECA [Common Infrastructure for National Cohorts in Europe, Canada and Africa] is funded by the European Union Horizon...
17 training materials0 events (3 past events)CINECA PROJECT https://www.cineca-project.eu/ https://tess.elixir-europe.org/content_providers/cineca CINECA’s aim is to deliver a federated infrastructure for data discovery and sharing of human genetic and phenotypic data for research that is interoperable across continents. CINECA [Common Infrastructure for National Cohorts in Europe, Canada and Africa] is funded by the European Union Horizon 2020 programme and the Canadian Institutes of Health Research. /system/content_providers/images/000/000/140/original/CINECA_logo.png?1589875546 -
European Bioinformatics Institute (EBI)
EMBL-EBI provides freely available data from life science experiments, performs basic research in computational biology and offers an extensive user training programme, supporting researchers in academia and industry.
409 training materials27 events (1818 past events)European Bioinformatics Institute (EBI) http://www.ebi.ac.uk https://tess.elixir-europe.org/content_providers/european-bioinformatics-institute-ebi EMBL-EBI provides freely available data from life science experiments, performs basic research in computational biology and offers an extensive user training programme, supporting researchers in academia and industry. /system/content_providers/images/000/000/002/original/EBI_logo.png?1469458224
Activity log
