Training materials
Licence: Creative Commons Attribution 4.0 International
and Difficulty level: Beginner
and Contributors: Deepti Varshney
-
e-learning
Decontamination of a genome assembly
• beginnerSequence assembly Assembly -
e-learning
Calculating α and β diversity from microbiome taxonomic data
• beginnerMetagenomics Microbial ecology Microbiome diversity metagenomics -
e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis … -
e-learning
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod … -
e-learning
Binning of metagenomic sequencing data
• beginnerMetagenomics Microbial ecology Sequence assembly Microbiome binning metagenomics microgalaxy -
e-learning
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
e-learning
16S Microbial analysis with Nanopore data
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy nanopore … -
e-learning
ERGA post-assembly QC
• beginnerSequence assembly Assembly QC animals assembly genome plants -
e-learning
Large genome assembly and polishing
• beginnerSequence assembly Assembly assembly nanopore plants polishing -
e-learning
NCBI BLAST+ against the MAdLand
• beginnerSequence analysis plants
- 1
- 2