Training materials
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e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
e-learning
Pre-processing of Single-Cell RNA Data
• beginnerTranscriptomics Single Cell -
e-learning
CLIP-Seq data analysis from pre-processing to motif detection
• beginnerTranscriptomics -
e-learning
Clustering 3K PBMCs with Scanpy
• beginnerTranscriptomics 10x Single Cell -
e-learning
Reference-based RNA-Seq data analysis
• beginnerTranscriptomics QC bulk collections cyoa drosophila rna-seq -
e-learning
RNA Seq Counts to Viz in R
• beginnerTranscriptomics interactive-tools -
e-learning
Machine learning: classification and regression
• beginnerStatistics and probability Statistics and machine learning -
e-learning
Regional GAM
• beginnerEcology EBV dataset EBV workflow Species populations EBV class Species traits EBV class -
e-learning
From peaks to genes
• beginnerIntroduction to Galaxy Analyses