Workflows
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Homology Modelling with SWISS-MODEL
This is the workflow of homology modelling with the SWISS-MODEL expert system
SWISS-MODEL is a web-based integrated service dedicated to protein structure homology modelling. It guides the user in building protein homology models at [different levels of...
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Image analysis
Imaging (http://edamontology.org/topic_3382)
Bioimage informatics (EDAM-bioimaging)
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Meta-pipe
meta-pipe
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Multiple Sequence Alignment, Analysis and Figure Generation with Jalview
This workflow accompanies a methods in molecular biology chapter currently in preparation.
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Peroxisomal Proteins Detection
Workflow to identify putative peroxisomal proteins from the FASTA sequence
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Phylogeny.fr "One Click" phylogeny
Phylogeny.fr is a free, simple to use web service dedicated to reconstructing and analysing phylogenetic relationships between molecular sequences.
Phylogeny.fr runs and connects various bioinformatics programs to reconstruct a robust phylogenetic tree from a set of sequences.The "one click"...
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Plant phenotyping and plant genomic data management
A learning path set for plant phenotyping and plant genomic data management with 4 domains : FAIR essentials, plant biological material, plant phenotyping experiment and omics experiments. At the end of the learning path, researchers or data managers specialized in plant research are able to :
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Protein Structure Modelling
This is the a workflow of protein modelling.
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READemption
READemption is a pipeline for the computational evaluation of RNA-Seq data. It was originally developed to process dRNA-Seq reads (as introduced by Sharma et al., Nature, 2010 (Pubmed)) originating from bacterial samples. Meanwhile is has been extended to process data generated in different...
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RNA-seq summarization with annotated genome
Basic workflow for RNA-seq analysis to get to a count table.