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AOPLink: Extracting and Analyzing Data Related to an AOP of Interest
Toxicology adverse outcome pathway AOP-Wiki RDF AOP-Wiki
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Book
Groovy Cheminformatics with the Chemistry Development Kit
• beginnerCheminformatics Chemistry -
Tutorial, Vignette
BridgeDbR Tutorial
• beginnerELIXIR RIR, BridgeDb -
Tutorial
How to install and load the Identifier Mapping Service with data needed for gene-to-variant and variant-to-gene
Genetic variation Genomics ELIXIR RIR, BridgeDb
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NanoXtract: Nanomaterials Image Analysis Tool Powered by the Enalos Cloud Platform
• beginnerImage analysis Cloud Computing nanomaterials -
Enalos Nanoinformatics Cloud Platform: A Safe-by-Design Tool for Functionalised Nanomaterials
• beginnernanoQSAR nanomaterials -
Nanoinformatics Model for Zeta Potential Prediction Powered by Enalos Cloud Platform
• beginnerzeta potential nanomaterials -
A network biology workflow to study transcriptomics data of the diabetic liver
• beginnerBiological networks Network Visualization -
Programming in the Life Sciences
• beginnerDrug discovery Pharmacology SPARQL Wikidata -
Tutorial
#metawinterschool contribution by BiGCaT
• beginnerMetabolomics Identifiers ELIXIR RIR, BridgeDb -
Open Science MOOC: Module 5, Open Research Software and Open Source
open source -
Tutorial
OpenRiskNet: Ontology Walkthrough and Workshop
• beginnerToxicology Ontology and terminology -
Tutorial
SPARQLing Biology: a beginners course
• beginnerBiology Query and retrieval Sparql queries Sparql syntax -
Tutorial
Use Scholia and Wikidata to find scientific literature
• beginnerLiterature -
BridgeDb-Matlab Usage Instructions
ELIXIR RIR, BridgeDb
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Identifier mapping with Cytoscape
ELIXIR RIR, BridgeDb -
hands-on tutorial
Information about chemicals
Cheminformatics VHP4Safety toxicology
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Blog post
Making BridgeDb Derby files with Groovy
•• intermediateBridgeDb Groovy -
Tutorial
NUTRIOME Workshop Tutorials
Metabolomics Transcriptomics RDM networks and pathways -
Tutorial
Adding nanomaterial data
•• intermediateToxicology Database management ontologies enanomapper RDF -
Video
NanoCommons - Data Management in Nano Safety Research
Data management Nanomaterials toxicology
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Creating InChIKeys for IUPAC names
Chemistry Cheminformatics OPSIN IUPAC name InChIKeys
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Tutorial, hands-on tutorial
WikiPathways Academy
• beginnerBiology Systems biology Pathway WikiPathways Biocuration -
Tutorial
SOM Prediction: Site-of-Metabolism Prediction
Biology Chemistry Metabolism Site-of-Metabolism Prediction
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Downloading all currently released BridgeDb identifier mapping databases
BridgeDb
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Tutorial
BridgeDb: Mapping Gene Identifiers
Genomics Identifiers BridgeDb
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Tutorial
Adding ontology terms
••• advancedenanomapper ontologies -
Tutorial
Registering SwissLipids identifiers in Wikidata
Chemistry lipids Wikidata -
tutorial
Registering Datasets in Wikidata
• beginnerFAIR data Wikidata
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