TeSS (Training eSupport System)

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Tutorial

Tutorials on COBREXA

•• intermediate
Personalised medicine Simulation experiment Modelling and simulation cell-level simulations Biomodelling HPC
Tutorial

Tutorial on developing Building Blocks

•• intermediate
Bioinformatics Workflows Personalised medicine HPC building blocks
Tutorial

Tutorial on CellNOpt

•• intermediate
Personalised medicine Simulation experiment Molecular interactions, pathways and networks Transcription factors and regulatory sites Modelling and simulation HPC Biomodelling Signalling
Tutorial

Tutorial on CARNIVAL

•• intermediate
Molecular interactions, pathways and networks Gene expression Omics RNA-Seq Network analysis RNA-Seq analysis HPC Signaling RNAseq, transcriptomics
Tutorial

Tutorial on using MPI with containers

•• intermediate
MPI Containers Computer Programming Documentation and help
Tutorial

Tutorial on working with computing clusters

•• intermediate
HPC
Learning pathway

Linux learning pathways

• beginner
Bioinformatics Linux Programming
Tutorial

From transcriptomics to mechanistic models of signalling

Gene expression Transcription factors and regulatory sites Signaling networks
Tutorial, Presentation

Materials from 'Introduction to High Performance Computing for Life Scientists' course

•• intermediate
Computational biology HPC GPU parallel computing
Learning pathway

Version control with Git

•• intermediate
Software engineering Open science Version control
Tutorial

Tutorial on using existing PerMedCoE Building Blocks and workflows

•• intermediate
Bioinformatics Workflows Personalised medicine Building blocks

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dthlopez

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Tutorials on COBREXA

Tutorial on developing Building Blocks

Tutorial on CellNOpt

Tutorial on CARNIVAL

Tutorial on using MPI with containers

Tutorial on working with computing clusters

Linux learning pathways

From transcriptomics to mechanistic models of signalling

Materials from 'Introduction to High Performance Computing for Life Scientists' course

Version control with Git

Tutorial on using existing PerMedCoE Building Blocks and workflows