Training materials
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e-learning
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
• beginnerSequence analysis covid19 gmod jbrowse1 -
e-learning
Phylogenetics - Back to basics
•• intermediateEvolutionary biology Evolution evolution phylogenetics -
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x MIGHTS Single Cell paper-replication -
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x MIGHTS Python Single Cell jupyter-notebook paper-replication -
e-learning
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x MIGHTS Single Cell jupyter-notebook paper-replication -
e-learning
Inferring single cell trajectories with Scanpy
• beginner10x MIGHTS Single Cell paper-replication -
e-learning
Checking expected species and contamination in bacterial isolate
• beginnerEcology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x MIGHTS R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
Clinical Metaproteomics 3: Verification
• beginnerMetagenomics Microbial ecology Microbiome label-TMT11 -
e-learning
Clinical Metaproteomics 4: Quantitation
• beginnerMetagenomics Microbial ecology Microbiome label-TMT11