Training materials
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Recorded webinar
Mathematical modelling as knowledge mapping in PhysiCell: a guided tour
Personalised medicine Computational biology
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Recorded webinar
Computer-assisted functional precision medicine in cancer
Simulation experiment Computational biology Personalised medicine
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Video
Steady State Analysis in COPASI
• beginnerSystems biology Computational biology Simulation experiment Modelling and simulation Visualisation -
WEBINAR: Getting started with command line bioinformatics
Computational biology Command line
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Tutorial, Documentation
runBioSimulations tutorial and help
• beginnerSystems biology Computational biology Simulation experiment Modelling and simulation biosimulators COMBINE OMEX SED-ML Modeling dynamic simulations SBML BNGL -
Tutorial, Documentation
BioSimulators tutorial and help
•• intermediateSystems biology Computational biology Simulation experiment Modelling and simulation Modeling biomodel dynamic simulations COMBINE OMEX SED-ML SBML BNGL -
examples, Tutorial, Jupyter notebook, API reference
DE-Sim examples, tutorials, and documentation
••• advancedSimulation experiment Computer science Mathematics Computational biology Modelling and simulation Visualisation data-driven modeling Computational modelling discrete-event simulation DES object-oriented programming Python data visualization Data Science -
Documentation
BioSimulations tutorial and help
•• intermediateComputational biology Systems biology Simulation experiment Visualisation Modelling and simulation SystemsBiology ComputationalBiology Computational modelling Modeling Biomodelling Model Kinetic modeling SED-ML COMBINE -
Documentation, API reference
bio.tools documentation
• beginnerBioinformatics Data curation and archival Computational biology Ontology and terminology Data retrieval Tools Curation Software Sofware curation Tool curation -
Notes, Scripts
MATHEMATICS BOOT CAMP: Introduction to Complex Systems Tools
Mathematics Computational biology ComputationalBiology Neuroscience complex systems