Training materials
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e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis Pathogens detection Phylogenetic tree cyoa microgalaxy -
e-learning
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
e-learning
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
e-learning
Data Manipulation Olympics - SQL
• beginnerSoftware engineering Foundations of Data Science cyoa jupyter-notebook sql -
e-learning
Data Manipulation Olympics - JQ
• beginnerSoftware engineering Foundations of Data Science cyoa json -
hands-on tutorial
Hands-on for 'Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition' tutorial
• beginnerMetagenomics metagenomics Nanopore data analysis Pathogens detection Phylogenetic tree Heatmap cyoa -
e-learning
Refining Genome Annotations with Apollo (eukaryotes)
•• intermediateGenome Annotation apollo2 cyoa eukaryote gmod jbrowse1 -
e-learning
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
••• advancedGenetic variation Variant Analysis cyoa -
e-learning
Reference-based RNA-Seq data analysis
• beginnerTranscriptomics QC bulk collections cyoa drosophila rna-seq -
e-learning
Data Manipulation Olympics
• beginnerSoftware engineering Foundations of Data Science cyoa