Training materials
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bioinformaticsdotca/MIC_2023
Metagenomics Microbiology
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mcalgaro93/benchdamicWorkshop
Metagenomics Microbiology
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bioinformatics-ca/MIC_2021
Metagenomics Microbiology
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galaxyproject/training-material
Galaxy Snakemake General Data management FAIR data Reproducibility Python R Unix/Linux Version control …
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e-learning
Metagenomics bioinformatics: A practical introduction
Metagenomic sequencing Metagenomics Microbiology Sequence assembly Microbial DNA
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e-learning
MGnify: Quick tour
Metagenomics Metatranscriptomics Microbiology Small molecules Metabolites Metabolome
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e-learning
M. tuberculosis Variant Analysis
•• intermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote … -
e-learning
Calling variants in non-diploid systems
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote -
e-learning
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy … -
e-learning
Essential genes detection with Transposon insertion sequencing
• beginnerGenomics Microbiology Sequence analysis Mobile genetic elements Genome Annotation bacteria essential genes microgalaxy tnseq