- Home
- Materials
Filter
Sort
-
-
Filter Clear filters
-
-
Scientific topic
- Comparative transcriptomics144
- Transcriptome144
- Transcriptomics144
- R142
- R program142
- R script142
- Algorithms90
- Computer programming90
- Data structures90
- Programming languages90
- Software development90
- Software engineering90
- Bayesian methods88
- Biostatistics88
- Descriptive statistics88
- Gaussian processes88
- Inferential statistics88
- Markov processes88
- Multivariate statistics88
- Probabilistic graphical model88
- Probability88
- Statistics88
- Statistics and probability88
- MicroRNA sequencing85
- RNA sequencing85
- RNA-Seq85
- RNA-Seq analysis85
- Small RNA sequencing85
- Small RNA-Seq85
- Small-Seq85
- Transcriptome profiling85
- WTSS85
- Whole transcriptome shotgun sequencing85
- miRNA-seq85
- Genome annotation82
- Exomes79
- Genomes79
- Genomics79
- Personal genomics79
- Synthetic genomics79
- Viral genomics79
- Whole genomes79
- Chromosome walking70
- Clone verification70
- DNA-Seq70
- DNase-Seq70
- High throughput sequencing70
- High-throughput sequencing70
- NGS70
- NGS data analysis70
- Next gen sequencing70
- Next generation sequencing70
- Panels70
- Primer walking70
- Sanger sequencing70
- Sequencing70
- Targeted next-generation sequencing panels70
- Python66
- Python program66
- Python script66
- py66
- Active learning58
- Ensembl learning58
- Kernel methods58
- Knowledge representation58
- Machine learning58
- Neural networks58
- Recommender system58
- Reinforcement learning58
- Supervised learning58
- Unsupervised learning58
- Metagenomics56
- Shotgun metagenomics56
- Data management51
- Metadata management51
- Research data management (RDM)51
- Bottom-up proteomics48
- Discovery proteomics48
- MS-based targeted proteomics48
- MS-based untargeted proteomics48
- Metaproteomics48
- Peptide identification48
- Protein and peptide identification48
- Proteomics48
- Quantitative proteomics48
- Single-cell genomics48
- Single-cell sequencing48
- Targeted proteomics48
- Top-down proteomics48
- Antimicrobial stewardship38
- Biological sequences38
- Data rendering38
- Data visualisation38
- Medical microbiology38
- Microbial genetics38
- Microbial physiology38
- Microbial surveillance38
- Microbiological surveillance38
- Microbiology38
- Molecular infection biology38
- Show N_FILTERS more
-
-
-
Tool
- Galaxy293
- FastQC34
- SAMtools28
- Bioconductor23
- BWA19
- MultiQC18
- fastp17
- BEDTools16
- scikit-learn15
- SCANPY14
- Cutadapt13
- DeepTools13
- JBrowse13
- QUAST11
- GEMINI10
- NanoPlot9
- taxonomy_krona_chart9
- BLAST8
- BUSCO8
- STAR8
- Trimmomatic8
- kraken28
- FreeBayes7
- seqtk7
- BCFtools6
- Bandage6
- MaxQuant6
- RStudio6
- Workflow4Metabolomics6
- ggplot26
- msConvert6
- BamTools5
- Biopython5
- Bowtie 25
- FASTX-Toolkit5
- Flye5
- Galactic Circos5
- HISAT25
- MSstats5
- MetaPhlAn5
- Open Babel5
- RSeQC5
- Unicycler5
- xcms5
- Diamond4
- HUMAnN24
- KrakenTools4
- MACS4
- MAFFT4
- Merqury4
- Minimap24
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
- Newick Utilities4
- UniProt4
- annotatemyids4
- gffread4
- mothur4
- snpEff4
- Apollo3
- Bracken3
- Bwa-mem23
- Cardinal3
- CellProfiler3
- Clustal 1.8 (Clustal W, Clustal X)3
- DropletUtils3
- GOseq3
- Galaxy Image Analysis3
- GenomeScope 2.03
- GraPhlAn3
- InterProScan (EBI)3
- QualiMap3
- RDKit3
- Salmon3
- SeqCode3
- SortMeRNA3
- Stacks3
- The Protein Data Bank (PDB)3
- Unipept3
- bx-python3
- compute_sequence_length3
- export2graphlan3
- gfastats3
- gffcompare3
- humann3
- lofreq3
- pyGenomeTracks3
- scikit-image3
- snippy3
- Bakta2
- Bio3D2
- Bowtie2
- COMBAT-TB Workbench2
- ChIPpeakAnno2
- Circos2
- European Nucleotide Archive (ENA)2
- FastTree2
- FeatureCounts2
- GECKO2
- GOEnrichment2
- Gromacs2
- Show N_FILTERS more
-
-
-
Content provider
- GTN671
- Glittr.org663
- European Bioinformatics Institute (EBI)383
- GOBLET104
- Software Carpentry70
- SIB Swiss Institute of Bioinformatics63
- Australian BioCommons49
- Khan Academy Statistics32
- BY-COVID31
- Bioconductor24
- IFB French Institute of Bioinformatics16
- VIB Training10
- Bioschemas9
- Data Carpentry9
- Coursera8
- Genome 3D8
- eNanoMapper8
- InterMine4
- Danish National Health Data Science Sandbox3
- NanoCommons2
- BioData.pt1
- ELIXIR1
- proteomicsML1
- Show N_FILTERS more
-
-
-
Keyword
- R282
- Transcriptomics120
- Python118
- RNA-seq84
- Genomics66
- Galaxy Server administration65
- Next generation sequencing65
- Bioinformatics62
- Statistics62
- Machine learning54
- Data science53
- Foundations of Data Science50
- Single-cell sequencing48
- Data management47
- jupyter-notebook46
- Proteomics42
- Reproducibility39
- Unix/Linux39
- Workflows38
- Data visualization37
- Single Cell37
- microgalaxy36
- FAIR data35
- General33
- Variant analysis29
- Development in Galaxy27
- Version control27
- Genome Annotation26
- training26
- Assembly25
- Contributing to the Galaxy Training Material25
- Using Galaxy and Managing your Data25
- Epigenetics24
- Ecology22
- Metagenomics22
- Statistics and machine learning22
- FAIR21
- ansible21
- Containerization20
- Shiny20
- Microbiome19
- git-gat19
- interactive-tools19
- ChIP-seq18
- Docker18
- metagenomics18
- Nextflow17
- Teaching and Hosting Galaxy training17
- Variant Analysis17
- 10x16
- Climate15
- prokaryote15
- FAIR Data, Workflows, and Research14
- Introduction to Galaxy Analyses14
- Sequence analysis14
- gmod14
- jbrowse114
- Cloud computing13
- Julia13
- Metabolomics13
- Shell13
- data management13
- earth-system13
- Programming12
- Spatial transcriptomics12
- cyoa12
- paper-replication12
- ATAC-seq11
- High performance computing11
- Image analysis11
- Introduction11
- Introduction bioinformatics11
- MIGHTS11
- Quarto11
- covid1911
- Extras10
- FAIRsharing10
- NGS10
- Rmarkdown10
- Snakemake10
- assembly10
- eukaryote10
- DDA9
- Evolution9
- Genome assembly9
- Git9
- Imaging9
- Long read sequencing9
- Metadata9
- Python biologists9
- SQL9
- databases9
- nanopore9
- one-health9
- plants9
- policies9
- standards9
- Analysis8
- Computational chemistry8
- EBV workflow8
- Show N_FILTERS more
-
-
-
Difficulty level
- Not specified1539
- Beginner519
- Intermediate98
- Advanced16
- Show N_FILTERS more
-
-
-
Licence
- License Not Specified1272
- Creative Commons Attribution 4.0 International682
- MIT License74
- Creative Commons Attribution Share Alike 4.0 International57
- GNU General Public License v3.0 only27
- Creative Commons Zero v1.0 Universal25
- Apache License 2.012
- BSD 3-Clause "New" or "Revised" License12
- Artistic License 2.02
- Creative Commons Attribution Non Commercial 4.0 International2
- Creative Commons Attribution Non Commercial Share Alike 4.0 International2
- GNU Affero General Public License v3.0 only2
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International1
- Do What The F*ck You Want To Public License1
- The Unlicense1
- Show N_FILTERS more
-
-
-
Target audience
- Students447
- PhD students122
- Clinicians106
- Galaxy Administrators92
- Instructors46
- Novice44
- Intermediate26
- Researchers17
- Biologists16
- Biologists, Genomicists, Computer Scientists16
- post-docs16
- Bench biologists15
- beginner bioinformaticians14
- Beginners13
- Graduate Students12
- Post-Doctoral Fellows12
- bioinformaticians9
- Life Science Researchers7
- biocurators7
- PhD5
- General Interest4
- Laboratory technicians4
- Life scientists4
- Trainers4
- Veterinarians4
- postgrad4
- biologists3
- postdoc3
- Postgraduate students2
- biology and bioinformatics sophomore undergraduates2
- postdocs2
- software developers, bioinformaticians2
- Anyone wants to start using the Unix/Linux OS1
- Bachelor students1
- Beginner informatics1
- Bioinformatician1
- Bioinformatics1
- Biomedical researchers1
- Clinical Scientists1
- Educators1
- High School Students1
- Lecturers1
- Life sciences1
- Life scientists with programming skills1
- Master students1
- Ontologists1
- Postdoctoral researchers1
- Prospective and existing trainers1
- Scientists1
- Structural Biologists1
- Technicians1
- Training Designers1
- Training instructors1
- Undergraduate students1
- University and College Level Students1
- Users1
- beginner1
- computational scientists1
- early stage phytopathogen researchers1
- experimeintal biologist researchers1
- field biologist researchers1
- geneticists1
- healthcare professionals1
- high school1
- life scientists1
- master1
- plant researchers1
- postdoctoral researchers1
- principle investigators1
- programmers1
- web developers1
- Show N_FILTERS more
-
-
-
Author
- Helena Rasche125
- Bérénice Batut93
- SIB Swiss Institute of Bioinformatics73
- Saskia Hiltemann60
- carpentries-incubator46
- Björn Grüning43
- Simon Gladman33
- Anton Nekrutenko28
- Anthony Bretaudeau27
- Nate Coraor27
- bebatut27
- Nicola Soranzo25
- bgruening25
- The Carpentries23
- Michelle Brazas21
- Yvan Le Bras21
- Fotis E. Psomopoulos20
- NBIS - National Bioinformatics Infrastructure Sweden20
- Wendi Bacon20
- posit-conf-202320
- Subina Mehta19
- Bazante Sanders18
- Terri Attwood18
- UC Davis Bioinformatics Core Training Page18
- Anne Fouilloux17
- Marie Josse17
- Mehmet Tekman17
- Teaching materials at the Harvard Chan Bioinformatics Core17
- posit::conf(2024)17
- Data Carpentry16
- Cristóbal Gallardo15
- Martin Morgan15
- Pratik Jagtap14
- bioinformatics.ca14
- CRUK CI Bioinformatics Core13
- Dave Clements13
- Donny Vrins13
- Katarzyna Kamieniecka13
- Maria Doyle13
- shiltemann13
- Delphine Lariviere12
- Krzysztof Poterlowicz12
- Marius van den Beek12
- Melanie Föll12
- Paul Zierep12
- Simon Bray12
- Wolfgang Maier12
- nekrut12
- Canadian Bioinformatics Workshops10
- Daniel Blankenberg10
- Instituto Gulbenkian de Ciência10
- Julia Jakiela10
- Martin Čech10
- Pavankumar Videm10
- Samaha, Georgina (orcid: 0000-0003-0419-1476)10
- The Gulbenkian Training Programme in Bioinformatics10
- @posit-pbc9
- Anika Erxleben9
- Anup Kumar9
- Fred Hutch Data Science Lab9
- John Chilton9
- Khaled Jum'ah9
- Lucille Delisle9
- Praveen Kumar9
- Wandrille Duchemin9
- allegra.via Via9
- rstudio::conf(2022)9
- Anne Pajon8
- Avans Hogeschool8
- Emma Leith8
- Joachim Wolff8
- Kaivan Kamali8
- Patricia Palagi8
- Sundeep Agarwal8
- Timothy J. Griffin8
- Alex Ostrovsky7
- Alexandre Cormier7
- Anna Syme7
- AstraZeneca7
- Bioinformatics, Rockefeller University7
- Christopher Barnett7
- Erwan Corre7
- Florian Christoph Sigloch7
- Laura Leroi7
- Matthias Fahrner7
- Michael Charleston7
- Paul Yorke7
- Ray Sajulga7
- Sergio Martínez Cuesta7
- Stéphanie Robin7
- pajanne7
- stortebecker7
- Allegra Via6
- Biocore@CRG6
- Clemens Blank6
- Coline Royaux6
- ELIXIR Goblet Train the Trainers6
- Geert van Geest6
- Gildas Le Corguillé6
- JuliaAcademy6
- Show N_FILTERS more
-
-
-
Contributor
- Saskia Hiltemann504
- Helena Rasche488
- Björn Grüning346
- Bérénice Batut230
- Nicola Soranzo167
- Cristóbal Gallardo103
- Anthony Bretaudeau99
- Niall Beard89
- Martin Čech82
- Nate Coraor71
- Gildas Le Corguillé62
- Marius van den Beek60
- William Durand58
- Wendi Bacon55
- Simon Gladman54
- Mehmet Tekman46
- carpentries-incubator46
- Lucille Delisle44
- Melanie Föll35
- Yvan Le Bras35
- Beatriz Serrano-Solano30
- Pavankumar Videm29
- SIB Swiss Institute of Bioinformatics28
- Teresa Müller28
- Simon Bray27
- Wolfgang Maier25
- Donny Vrins24
- Subina Mehta24
- Anne Fouilloux23
- Maria Doyle23
- Peter van Heusden23
- Julia Jakiela20
- NBIS - National Bioinformatics Infrastructure Sweden20
- posit-conf-202320
- Bazante Sanders19
- Anton Nekrutenko18
- UC Davis Bioinformatics Core Training Page18
- Anup Kumar17
- Teaching materials at the Harvard Chan Bioinformatics Core17
- posit::conf(2024)17
- Data Carpentry16
- Deepti Varshney15
- Mélanie Petera14
- bioinformatics.ca14
- CRUK CI Bioinformatics Core13
- Marie Josse13
- Matthias Bernt13
- Pablo Moreno12
- Dave Clements11
- David López11
- Delphine Lariviere11
- Gianmauro Cuccuru11
- Mira Kuntz11
- Stéphanie Robin11
- Canadian Bioinformatics Workshops10
- Instituto Gulbenkian de Ciência10
- John Chilton10
- Marisa Loach10
- The Gulbenkian Training Programme in Bioinformatics10
- @posit-pbc9
- Fred Hutch Data Science Lab9
- Khaled Jum'ah9
- Mallory Freeberg9
- rstudio::conf(2022)9
- Kaivan Kamali8
- Melissa Burke8
- Paul Zierep8
- Pratik Jagtap8
- Sundeep Agarwal8
- Tomas Klingström8
- Alexandre Cormier7
- Anna Syme7
- AstraZeneca7
- Bioinformatics, Rockefeller University7
- Christopher Barnett7
- Hans-Rudolf Hotz7
- Sergio Martínez Cuesta7
- Bert Droesbeke6
- Biocore@CRG6
- Catherine Bromhead6
- Clemens Blank6
- Ekaterina Polkh6
- Enis Afgan6
- Florian Christoph Sigloch6
- Florian Heyl6
- JuliaAcademy6
- Linelle Abueg6
- Software Carpentry6
- Alex Ostrovsky5
- Alireza Khanteymoori5
- Andrea Bagnacani5
- Hadley Wickham5
- John Davis5
- Katarzyna Kamieniecka5
- The Carpentries Lab5
- Timothy J. Griffin5
- cambiotraining5
- jhudsl5
- Clea Siguret4
- Coline Royaux4
- Show N_FILTERS more
-
-
-
Related resource
- Associated Training Datasets272
- Associated Workflows256
- Jupyter Notebook (with Solutions)42
- Jupyter Notebook (without Solutions)42
- Input datasets32
- Associated slides9
- Quarto/RMarkdown Notebook6
- Proteomics dataset5
- Sequence analysis dataset5
- Transcriptomics dataset5
- Assembly dataset4
- Variant Analysis dataset4
- Assembly slides3
- Development in Galaxy slides3
- ChIP-Seq data analysis dataset2
- Epigenetics dataset2
- Genome Annotation dataset2
- Metagenomics dataset2
- Sequence analysis slides2
- Contributing to the Galaxy Training Material slides1
- Galaxy Server administration slides1
- Genome Annotation slides1
- Introduction to Galaxy Analyses dataset1
- Introduction to Galaxy dataset1
- Statistics dataset1
- Transcriptomics slides1
- User Interface and Features dataset1
- Show N_FILTERS more
-
-
-
Status
- Active54
- Show N_FILTERS more
-
- Show disabled materials
- Hide archived materials
