Training materials
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Tutorial
Tutorial on using existing PerMedCoE Building Blocks and workflows
•• intermediateBioinformatics Workflows Personalised medicine Building blocks -
Tutorial, Presentation
Materials from 'Introduction to High Performance Computing for Life Scientists' course
•• intermediateComputational biology HPC GPU parallel computing -
Tutorial
Tutorial on developing Building Blocks
•• intermediateBioinformatics Workflows Personalised medicine HPC building blocks -
Tutorial
Tutorial on working with computing clusters
•• intermediateHPC -
Tutorial
Tutorial on using MPI with containers
•• intermediateMPI Containers Computer Programming Documentation and help -
Tutorial
Tutorial on CARNIVAL
•• intermediateMolecular interactions, pathways and networks Gene expression Omics RNA-Seq Network analysis RNA-Seq analysis HPC Signaling RNAseq, transcriptomics -
Tutorial
Tutorials on COBREXA
•• intermediatePersonalised medicine Simulation experiment Modelling and simulation cell-level simulations Biomodelling HPC -
Tutorial
Tutorial on CellNOpt
•• intermediatePersonalised medicine Simulation experiment Molecular interactions, pathways and networks Transcription factors and regulatory sites Modelling and simulation HPC Biomodelling Signalling -
Tutorial, Documentation
BioSimulators tutorial and help
•• intermediateSystems biology Computational biology Simulation experiment Modelling and simulation Modeling biomodel dynamic simulations COMBINE OMEX SED-ML SBML BNGL -
Tutorial
Adding nanomaterial data
•• intermediateToxicology Database management ontologies enanomapper RDF