Training materials
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GTN Smörgåsbord 2: Tapas - A Very Short Introduction to Galaxy
Automation, Galaxy workflows, command line Galaxy Galaxy 101 Galaxy, Accelerating Research, data sharing Galaxy, Case Studies, SARS-COV-2 data Galaxy, Customising, customise, ObservableHQ Galaxy, Mutation calling, viral genome reconstruction, lineage assignment, clade assignment, SARS-CoV-2 sequencing data Galaxy, NGS Galaxy, Pandemics Research, Mass Spectrometry, MS Galaxy, Quality control, QC Galaxy, Removal, human reads, SARS-CoV-2 sequencing data Galaxy, Scripting, coding, Galaxy, API, BioBlend Galaxy, Unicycler, assembly, SARS-CoV-2 genome, preprocessing, remove, clean, human genome reads Galaxy, Upload data, ENA Galaxy, data collection Galaxy, mapping Galaxy, usegalaxy, SARS-CoV-2 Bot Galaxy, viral Beacon SARS-CoV-2, Monitoring, Analysis, Galaxy SRA Aligned, read format, Galaxy
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FAIR Cookbook: hands-on recipes to make and keep data FAIR
FAIRcookbook FAIR recipes
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FAIRsharing for you: societies and alliances
FAIRsharing standards databases policies FAIR
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FAIRsharing for you: libraries and trainers
FAIRsharing standards databases policies FAIR
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FAIRsharing for you: developers and curators
FAIRsharing standards databases policies FAIR
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GTN Smörgåsbord 3: OneHealth - Building a pathogen surveillance system with Galaxy - An automated SARS-CoV-2 genome surveillance system built around Galaxy
Galaxy, Build, pathogen surveillance system, automated, automation, SARS-CoV-2, genome surveillance, system Galaxy, Building, pathogen surveillance system, Automating, automation, workflows, command line Galaxy, Building, pathogen surveillance system, Removal,human reads, SARS-CoV-2, sequencing data Galaxy, Building, pathogen surveillance system, Upload data, ENA Galaxy, Building, pathogen surveillance system, usegalaxy, SARS-CoV-2, Bot Galaxy, Sequencing data analysis, spectrum, viral genomes Galaxy, Tuberculosis Sequence Analysis, Concepts, drug-resistance, prediction, mutation-based, clustering Galaxy, Tuberculosis Sequence Analysis, Identifying, tuberculosis transmission, links, SNPs, transmission clusters Galaxy, Tuberculosis Sequence Analysis, Implementation, NGS, TB- WHO, documents, considerations Galaxy, Tuberculosis Sequence Analysis, Tuberculosis, Variant Analysis Galaxy, Tuberculosis Sequence Analysis, phylogenetics Galaxy, Viral Pathogen Analysis, Avian influenza, viral strain, data analysis, gene segment, sequencing data Galaxy, Viral Pathogen Analysis, NCBI, Sequence Read Archive, SRA, SARS-CoV-2, variant analysis Galaxy, Viral Pathogen Analysis, Pox virus, genome analysis, tiled-amplicon, sequencing data Galaxy, build, pathogen surveillance system, Mutation calling, viral genome, reconstruction, lineage/clade assignment, SARS-CoV-2, sequencing data
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GTN Smörgåsbord 3: FAIR data and provenance with RO-Crate and Galaxy - Building RO-Crates - An overview of the RO-Crate concept and its implementations
Galaxy, FAIR data, data provenance, RO-Crate, Publishing Galaxy, FAIR data, data provenance, RO-Crate, Publishing Workflow, GitHub repositories Galaxy, FAIR data, data provenance, RO-Crate, Publishing Workflow, Submitting workflows, LifeMonitor Galaxy, FAIR data, data provenance, RO-Crate, Publishing, Workflow, Registering, WorkflowHub Galaxy, FAIR data, data provenance, RO-Crate, Python Galaxy, FAIR data, data provenance, RO-Crate, RO-Crate concept, RO-Crate implementations Galaxy, FAIR data, data provenance, RO-Crate, Workflow Run, RO-Crate Introduction
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Data management in social sciences and humanities with DMEG
Life sciences Social sciences Health sciences Research Data Management tools practices use cases challenges DMEG RDMkit guidance
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Data management in life sciences with RDMkit
Life sciences Social sciences Health sciences Research Data Management tools practices use cases challenges DMEG RDMkit guidance
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Challenges and issues in data management
Life sciences Social sciences Health sciences Research Data Management tools practices use cases challenges DMEG RDMkit guidance