Training materials
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e-learning
Antibiotic resistance detection
• beginnerMetagenomics Microbial ecology Metagenomic sequencing Public health and epidemiology Microbiology Infectious disease Sequence analysis Antimicrobial resistance Microbiome amr assembly microgalaxy nanopore plasmids -
e-learning
Analyses of metagenomics data - The global picture
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding Microbiome microgalaxy -
e-learning
Metatranscriptomics analysis using microbiome RNA-seq data
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
e-learning
16S Microbial Analysis with mothur (short)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
e-learning
Assembly of metagenomic sequencing data
• beginnerMetagenomics Microbial ecology Sequence assembly Microbiome assembly metagenomics microgalaxy -
e-learning
16S Microbial analysis with Nanopore data
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy nanopore plants -
e-learning
Workflow Run RO-Crate Introduction
• beginnerFAIR Data, Workflows, and Research ro-crate -
e-learning
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
e-learning
Clean and manage Sanger sequences from raw files to aligned consensus
• beginnerSequence analysis -
e-learning
Screening assembled genomes for contamination using NCBI FCS
• beginnerSequence analysis