Training materials
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e-learning
FAIR in a nutshell
• beginnerFAIR Data, Workflows, and Research data stewardship fair open -
slides
Contribute to the BioImage.IO models
• beginnerImaging Image analysis using Deep Learning bioimageio image analysis -
Video
Querying versioned terminologies - How to improve the accuracy of data analysis?
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Query data Versioning of Terminology Clinical ATC … -
e-learning
Course Builder
• beginnerTeaching and Hosting Galaxy training cyoa -
e-learning
Creating high resolution images of Galaxy Workflows
• beginnerUsing Galaxy and Managing your Data workflows -
e-learning
Fine tune large protein model (ProtTrans) using HuggingFace
• beginnerStatistics and probability Statistics and machine learning deep-learning dephosphorylation-site-prediction fine-tuning interactive-tools jupyter-lab machine-learning -
e-learning
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
• beginnerSequence analysis covid19 gmod jbrowse1 -
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x MIGHTS Python Single Cell jupyter-notebook paper-replication -
e-learning
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x MIGHTS Single Cell jupyter-notebook paper-replication -
e-learning
Inferring single cell trajectories with Scanpy
• beginner10x MIGHTS Single Cell paper-replication