Training materials
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e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x MIGHTS R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
e-learning
RO-Crate in Python
• beginnerFAIR Data, Workflows, and Research jupyter-notebook ro-crate -
e-learning
Inferring single cell trajectories with Monocle3 (R)
• beginner10x MIGHTS R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
Python - Coding Style
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
Inferring single cell trajectories with Scanpy (Python)
• beginnerTranscriptomics 10x MIGHTS Python Single Cell jupyter-notebook paper-replication -
e-learning
Scripting Galaxy using the API and BioBlend
• beginnerSoftware engineering Development in Galaxy jupyter-notebook -
e-learning
Python - Subprocess
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
CLI Educational Game - Bashcrawl
•• intermediateSoftware engineering Foundations of Data Science bash game jupyter-notebook -
e-learning
Python - Globbing
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook