Training materials
Related resources: Associated Training Datasets
and Difficulty level: Beginner
and Contributors: Pavankumar Videm
11 materials found
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e-learning
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
e-learning
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x MIGHTS Single Cell paper-replication -
e-learning
Inferring single cell trajectories with Scanpy
• beginner10x MIGHTS Single Cell paper-replication -
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x MIGHTS R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
Pre-processing of 10X Single-Cell ATAC-seq Datasets
• beginner10x Single Cell epigenetics -
e-learning
Inferring single cell trajectories with Monocle3 (R)
• beginner10x MIGHTS R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
RNA-RNA interactome data analysis
• beginnerTranscriptomics -
e-learning
Whole transcriptome analysis of Arabidopsis thaliana
• beginnerTranscriptomics miRNA plants stress tolerance -
e-learning
Analysis of plant scRNA-Seq Data with Scanpy
• beginnerTranscriptomics Single Cell paper-replication plants
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