Training materials
Difficulty level: Beginner
and Licence: Creative Commons Attribution 4.0 International
and Contributors: Pablo Moreno
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e-learning
GO Enrichment Analysis on Single-Cell RNA-Seq Data
• beginnerGO enrichment Single Cell single cell -
e-learning
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
e-learning
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
e-learning
Importing files from public atlases
• beginnerSingle Cell data import data management -
e-learning
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x MIGHTS Single Cell jupyter-notebook paper-replication -
e-learning
Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution
• beginnerSingle Cell data management transcriptomics -
e-learning
Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution
• beginnerSingle Cell data management -
e-learning
Inferring single cell trajectories with Monocle3
• beginnerTranscriptomics 10x MIGHTS Single Cell paper-replication -
e-learning
Combining single cell datasets after pre-processing
• beginnerTranscriptomics 10x MIGHTS Single Cell paper-replication -
e-learning
Creating content in Markdown
• beginnerContributing to the Galaxy Training Material
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