Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Whole genome sequencing
    • Assembly17
    • Sequence assembly17
    • Biological sequences8
    • Comparative transcriptomics8
    • Sequence analysis8
    • Sequence databases8
    • Transcriptome8
    • Transcriptomics8
    • Community analysis5
    • Environmental microbiology5
    • Metagenomics5
    • Microbial ecology5
    • Microbiome5
    • Molecular community analysis5
    • Shotgun metagenomics5
    • Epidemiology4
    • Epigenomics4
    • Public health4
    • Public health and epidemiology4
    • Taxonomy4
    • Antimicrobial stewardship3
    • Exomes3
    • Genome annotation3
    • Genomes3
    • Genomics3
    • Medical microbiology3
    • Microbial genetics3
    • Microbial physiology3
    • Microbial surveillance3
    • Microbiological surveillance3
    • Microbiology3
    • Molecular infection biology3
    • Molecular microbiology3
    • Personal genomics3
    • Synthetic genomics3
    • Viral genomics3
    • Whole genomes3
    • Bayesian methods2
    • Biostatistics2
    • De novo genome sequencing2
    • Descriptive statistics2
    • Diffraction experiment2
    • Exometabolomics2
    • Gaussian processes2
    • Genome sequencing2
    • Imaging2
    • Inferential statistics2
    • LC-MS-based metabolomics2
    • MS-based metabolomics2
    • MS-based targeted metabolomics2
    • MS-based untargeted metabolomics2
    • Markov processes2
    • Mass spectrometry-based metabolomics2
    • Metabolites2
    • Metabolome2
    • Metabolomics2
    • Metabonomics2
    • Microscopy2
    • Microscopy imaging2
    • Multivariate statistics2
    • NMR-based metabolomics2
    • Optical super resolution microscopy2
    • Photonic force microscopy2
    • Photonic microscopy2
    • Probabilistic graphical model2
    • Probability2
    • Statistics2
    • Statistics and probability2
    • WGS2
    • Whole genome resequencing2
    • AMR1
    • Algorithms1
    • Antibiotic resistance (ABR)1
    • Antifungal resistance1
    • Antimicrobial resistance1
    • Antiprotozoal resistance1
    • Antiviral resistance1
    • Communicable disease1
    • Computational ecology1
    • Computer programming1
    • DNA metabarcoding1
    • DNA variation1
    • Data structures1
    • Disease1
    • Ecoinformatics1
    • Ecological informatics1
    • Ecology1
    • Ecosystem science1
    • Environmental metabarcoding1
    • Extensive drug resistance (XDR)1
    • Genetic variation1
    • Genomic variation1
    • Infectious disease1
    • Metabarcoding1
    • Multidrug resistance1
    • Multiple drug resistance (MDR)1
    • Multiresistance1
    • Mutation1
    • Pandrug resistance (PDR)1
    • Show N_FILTERS more
    • Tool
    • Galaxy
    • Bandage2
    • FastQC2
    • QUAST2
    • fastp2
    • Bwa-mem21
    • Filtlong1
    • Flye1
    • NanoPlot1
    • Polypolish1
    • shovill1
    • Show N_FILTERS more
    • Content provider
    • GTN2
    • Show N_FILTERS more
    • Keyword
    • Assembly2
    • assembly2
    • microgalaxy2
    • amr1
    • illumina1
    • nanopore1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner2
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International2
    • Show N_FILTERS more
    • Target audience
    • Students2
    • Show N_FILTERS more
    • Author
    • Bazante Sanders2
    • Bérénice Batut2
    • Show N_FILTERS more
    • Contributor
    • Cristóbal Gallardo
    • Björn Grüning5
    • Bérénice Batut5
    • Helena Rasche5
    • Saskia Hiltemann5
    • Anthony Bretaudeau4
    • Bazante Sanders3
    • Miaomiao Zhou3
    • Teresa Müller3
    • Clea Siguret2
    • Deepti Varshney2
    • pimarin2
    • Matúš Kalaš1
    • Nate Coraor1
    • Paul Zierep1
    • Show N_FILTERS more
    • Resource type
    • e-learning2
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets2
    • Associated Workflows2
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Whole genome sequencing

and Tools: Galaxy

and Contributors: Cristóbal Gallardo

2 materials found
  • e-learning

    Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)

    • beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy …
  • e-learning

    Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

    • beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy
Training eSupport System
[email protected]
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.4.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.