Training materials
Licence: Creative Commons Attribution 4.0 International
and Keywords: Assembly
and Contributors: Björn Grüning
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e-learning
Decontamination of a genome assembly
• beginnerSequence assembly Assembly -
e-learning
Assembly of the mitochondrial genome from PacBio HiFi reads
• beginnerSequence assembly Assembly -
e-learning
ERGA post-assembly QC
• beginnerSequence assembly Assembly QC animals assembly genome plants -
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy … -
e-learning
Chloroplast genome assembly
• beginnerSequence assembly Assembly jbrowse1 nanopore plants -
e-learning
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
•• intermediateSequence assembly Assembly covid19 -
e-learning
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
e-learning
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
e-learning
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
e-learning
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote
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