Training materials
Authors: Delphine Lariviere
and Difficulty level: Beginner
and Licence: Creative Commons Attribution 4.0 International
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e-learning
Decontamination of a genome assembly
• beginnerSequence assembly Assembly -
e-learning
Assembly of the mitochondrial genome from PacBio HiFi reads
• beginnerSequence assembly Assembly -
e-learning
ERGA post-assembly QC
• beginnerSequence assembly Assembly QC animals assembly genome plants -
e-learning
Essential genes detection with Transposon insertion sequencing
• beginnerGenomics Microbiology Sequence analysis Mobile genetic elements Genome Annotation bacteria essential genes microgalaxy tnseq -
e-learning
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
e-learning
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
e-learning
Use Jupyter notebooks in Galaxy
• beginnerUsing Galaxy and Managing your Data -
slides
Essential genes detection with Transposon insertion sequencing
• beginnerGenome Annotation bacteria essential genes tnseq -
slides
Unicycler Assembly
• beginnerSequence assembly Assembly prokaryote