United Kingdom
video
RDMbites | RNAseq data submission: ArrayExpress
Relevant links:
RDMbite “High-throughput sequencing data repositories”: https://youtu.be/ZoU4R3xVn3o?si=NfD_FWIW7CNZV-1-
MIAME: https://www.fged.org/projects/miame/
MINSEQE: https://www.fged.org/projects/minseqe/
Submitting data to ArrayExpress: https://www.ebi.ac.uk/training/online/courses/array-express-quick-tour/submitting-data-to-arrayexpress/
Accepted Raw data formats: https://www.ebi.ac.uk/fg/annotare/help/accepted_raw_ma_file_formats.html
ArrayExpress: https://www.ebi.ac.uk/biostudies/arrayexpress
Submitting RNAseq data via ArrayExpress: https://www.ebi.ac.uk/biostudies/arrayexpress
Creators: Korneel Hens (https://orcid.org/0000-0002-0362-7007 )
Reviewers: Robert Andrews (https://orcid.org/0000-0002-3491-2361)
The RDMbites are funded by the ELIXIR-UK: FAIR Data Stewardship training UKRI award (MR/V038966/1)
00:13 Learning objectives
00:27 What is ArrayExpress
01:32 What do we need to provide?
02:38 Which files do we need to provide?
03:07 Submitting RNAseq data via ArrayExpress
07:34 Acknowledgements
Licence: Creative Commons Attribution 4.0 International
Contact: [email protected]
Keywords: data management, RDM
Resource type: Video Lecture
Learning objectives:
What is ArrayExpress?
What information do we need to provide?
How to submit data?
Contributors: Korneel Hens, Robert Andrews
Activity log
