video

RDMbites | High-throughput sequencing data repositories

View material

Relevant links:
EBI: https://www.ebi.ac.uk/
ArrayExpress: https://www.ebi.ac.uk/biostudies/arrayexpress
ENA: https://www.ebi.ac.uk/ena/browser/home
NCBI: https://www.ncbi.nlm.nih.gov/
GEO: https://www.ncbi.nlm.nih.gov/geo/
SRA: https://www.ncbi.nlm.nih.gov/sra
DDBJ: https://www.ddbj.nig.ac.jp/index-e.html
GEA: https://www.ddbj.nig.ac.jp/gea/index-e.html
DRA: https://www.ddbj.nig.ac.jp/dra/index-e.html
INSDC: https://www.insdc.org/
https://ena-docs.readthedocs.io/en/latest/submit/general-guide/metadata.html

Creators: Korneel Hens (https://orcid.org/0000-0002-0362-7007 )
Reviewers: Robert Andrews (https://orcid.org/0000-0002-3491-2361)

The RDMbites are funded by the ELIXIR-UK: FAIR Data Stewardship training UKRI award (MR/V038966/1)

00:15 Learning objectives
00:29 Which HTS databases are there?
02:04 How are the HTS repositories interconnected?
03:05 SRA Metadata model
03:57 Metadata models
04:41 Acknowledgements

Licence: Creative Commons Attribution 4.0 International

Contact: [email protected]

Keywords: data management, RDM

Resource type: Video Lecture

Learning objectives:

Which HTS repositories are there?
How are the HTS repositories interconnected?
Which metadata models are used?

Contributors: Korneel Hens, Robert Andrews

Activity log