e-learning

Submitting sequence data to ENA

View material

Abstract

Raw reads contain valuable information, such as coverage depth and quality scores, that is lost in a consensus sequence.

About This Material

This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.

Questions this will address

  • How do you submit raw sequence reads and assembled genomes to the European Nucleotide Archive?

Learning Objectives

  • Submit raw sequencing reads and metadata to ENA's test server
  • Submit consensus sequence and metadata to ENA's test server

Licence: Creative Commons Attribution 4.0 International

Keywords: Using Galaxy and Managing your Data, covid19

Target audience: Students

Resource type: e-learning

Version: 9

Status: Active

Prerequisites:

  • Removal of human reads from SARS-CoV-2 sequencing data
  • Using dataset collections

Learning objectives:

  • Submit raw sequencing reads and metadata to ENA's test server
  • Submit consensus sequence and metadata to ENA's test server

Date modified: 2024-04-04

Date published: 2021-08-10

Authors: Bert Droesbeke, Boris Depoortere, Miguel Roncoroni

Contributors: Bert Droesbeke, Miguel Roncoroni

Activity log