e-learning
Genome Assembly Quality Control
Abstract
In this tutorial, we will assess the assembly quality of 2 assemblies generated with Hifiasm and Flye using PacBio HiFi reads of a species of fungi, Saccharomyces cerevisiae INSC1019 and compare the results with the actual reference genome Saccharomyces cerevisiae S288C.
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- Is my genome assembly ready for annotation and/or scaffolding?
Learning Objectives
- Assess assembly quality
Licence: Creative Commons Attribution 4.0 International
Keywords: Assembly, assembly, quality control
Target audience: Students
Resource type: e-learning
Version: 4
Status: Active
Prerequisites:
- Introduction to Galaxy Analyses
- Quality Control
Learning objectives:
- Assess assembly quality
Date modified: 2023-11-09
Date published: 2022-08-26
Contributors: Alexandre Cormier, Anthony Bretaudeau, Erwan Corre, Laura Leroi, Stéphanie Robin
Scientific topics: Sequence assembly
Activity log
