e-learning
Genome annotation with Prokka
Abstract
In this section we will use a software tool called Prokka to annotate a draft genome sequence. Prokka is a “wrapper”; it collects together several pieces of software (from various authors), and so avoids “re-inventing the wheel”.
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- How can we annotate a bacterial genome?
- How can we visualize annotated genomic features?
Learning Objectives
- Load genome into Galaxy
- Annotate genome with Prokka
- View annotations in JBrowse
Licence: Creative Commons Attribution 4.0 International
Keywords: Genome Annotation, gmod, jbrowse1, microgalaxy, prokaryote
Target audience: Students
Resource type: e-learning
Version: 25
Status: Active
Prerequisites:
Introduction to Galaxy Analyses
Learning objectives:
- Load genome into Galaxy
- Annotate genome with Prokka
- View annotations in JBrowse
Date modified: 2024-08-07
Date published: 2018-03-06
Contributors: Anna Syme, Simon Gladman, Torsten Seemann
Scientific topics: Genomics, Microbiology, Gene and protein families, Sequence analysis
Activity log
