e-learning
De Bruijn Graph Assembly
Abstract
Optimised de Bruijn Graph assemblies using the Velvet Optimiser and SPAdes
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- What are the factors that affect genome assembly?
- How does Genome assembly work?
Learning Objectives
- Perform an optimised Velvet assembly with the Velvet Optimiser
- Compare this assembly with those we did in the basic tutorial
- Perform an assembly using the SPAdes assembler.
Licence: Creative Commons Attribution 4.0 International
Keywords: Assembly
Target audience: Students
Resource type: e-learning
Version: 25
Status: Active
Prerequisites:
- Introduction to Galaxy Analyses
- Quality Control
Learning objectives:
- Perform an optimised Velvet assembly with the Velvet Optimiser
- Compare this assembly with those we did in the basic tutorial
- Perform an assembly using the SPAdes assembler.
Date modified: 2024-02-01
Date published: 2017-05-24
Contributors: Helena Rasche, Saskia Hiltemann, Simon Gladman
Scientific topics: Sequence assembly
External resources:
Activity log
