hands-on tutorial

Hands-on for 'Antibiotic resistance detection' tutorial

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The questions this addresses are:
- How do I assemble a genome with Nanopore data?
- How do I get more information about the structure of the genomes?
- How do I get more information about the antimicrobial resistance genes?

The objectives are:
- Perform Quality control on your reads
- Assemble a genome with Minimap2/Miniasm/Racon
- Determine the structure of the genome(s)
- Scan for antimicrobial resistance genes with Staramr

Licence: Creative Commons Attribution 4.0 International

Keywords: metagenomics, nanopore, plasmids, assembly, amr

Target audience: Students

Resource type: hands-on tutorial

Authors: Saskia Hiltemann, Willem de Koning

Contributors: Saskia Hiltemann, Willem de Koning

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