e-learning
Data submission using ENA upload Tool
Abstract
This tutorial will guide you through the necessary steps to manage and prepare sequencing files (ab1, FASTQ, FASTA) for submission to the genomic database ENA.
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- How to prepare sequences for submission to ENA?
- How to upload raw sequences to ENA?
Learning Objectives
- Manage sequencing files (ab1, FASTQ, FASTA, FASTQ.GZ)
- Clean sequences in an automated and reproducible manner
- Perform alignments for each sequence
- Have the necessary sequence format to submit to ENA
- Submit raw reads to ENA using the ENA upload Tool
Licence: Creative Commons Attribution 4.0 International
Keywords: Ecology
Target audience: Students
Resource type: e-learning
Version: 1
Status: Active
Prerequisites:
Introduction to Galaxy Analyses
Learning objectives:
- Manage sequencing files (ab1, FASTQ, FASTA, FASTQ.GZ)
- Clean sequences in an automated and reproducible manner
- Perform alignments for each sequence
- Have the necessary sequence format to submit to ENA
- Submit raw reads to ENA using the ENA upload Tool
Date modified: 2024-12-13
Date published: 2024-12-13
Contributors: Pauline Seguineau, Saskia Hiltemann, Yvan Le Bras
Scientific topics: Ecology
Activity log
