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Content provider
- SIB Swiss Institute of Bioinformatics276
- ELIXIR Slovenia10
- BioData.pt6
- ELIXIR: The Czech Republic Node6
- ELIXIR-SI eLearning Platform (EeLP)4
- Centre for Digital Life Norway3
- ELIXIR Portugal3
- Galaxy Project3
- Birmingham Metabolomics Training Centre2
- Data Carpentry2
- ELIXIR Norway2
- European Bioinformatics Institute (EBI)2
- de.NBI2
- Barcelona Supercomputing Center (BSC)1
- BioExcel1
- ELIXIR1
- ELIXIR Luxembourg1
- IFB French Institute of Bioinformatics1
- INB: Spanish National Bioinformatics Institute1
- Jalview1
- NORBIS, the Norwegian national research school in bioinformatics, biostatistics and systems biology1
- Software Carpentry1
- University of Cambridge Bioinformatics Training1
- VIB Conferences1
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Keyword
- training24
- EeLP16
- eLearning16
- Data management plan8
- bioinformatics8
- life sciences8
- Computer science6
- DMP6
- Data analysis6
- experimental biology6
- functional genomics6
- genes and genomes6
- genomics5
- molecular modelling5
- next generation sequencing5
- transcriptomics5
- Genomics4
- QSAR4
- biochemistry4
- data management4
- high-performance computing4
- in silico drug design4
- mauro delorenzi & frédéric schütz group4
- molecular docking4
- pharmacophore4
- reproducibility4
- Assembly3
- Data managment plan3
- Population Genomics3
- Reproducibility3
- Training3
- biomarkers3
- biostatistics3
- data sharing3
- machine learning3
- open data3
- population genomics3
- proteins and proteomes3
- proteomics3
- single-cell biology3
- R-programming2
- BioExcel2
- Bioinformatics2
- Chemical biology (chemical-biology)2
- DMP tools2
- Data carpentry2
- Data storage2
- GWAS2
- Galaxy2
- Genetic Diversity2
- HDRUK2
- Metabolomics2
- NGS bioinformatics2
- NeLS2
- Nextflow2
- PDBe2
- SoftwareCarpentry2
- assembly2
- basic research2
- data mining2
- data publication2
- data security2
- drug discovery2
- frédérique lisacek group2
- genetic clustering2
- glycomics2
- mark ibberson group2
- mass spectrometry2
- microbiology2
- protein interactions2
- rémy bruggmann group2
- services and resources2
- structural biology2
- virtual screening2
- RNA-Seq1
- #training1
- API1
- ATAC-seq1
- Ab initio models1
- Artificial Intelligence1
- Autodock Vina1
- Bayesian inference1
- BioBB1
- Bioconductor1
- Bisulfite-Seq1
- CWL1
- ChEMBL: Bioactive data for drug discovery (5496)1
- ChIP-Seq1
- Chemical biology1
- Chimera1
- Command line1
- Compliance1
- Computational Biology1
- ComputationalBiology1
- Conference1
- DMP evaluation1
- DMP templates1
- DNA Methylation1
- DNA-seq1
- Data Protection1
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Scientific topic
- Data management16
- Metadata management16
- Bioinformatics15
- Cloud computing11
- Computer science11
- Exomes11
- Genome annotation11
- Genomes11
- Genomics11
- HPC11
- High performance computing11
- High-performance computing11
- Personal genomics11
- Synthetic genomics11
- Viral genomics11
- Whole genomes11
- Research data management (RDM)5
- Biological sequences4
- Chromosome walking4
- Clone verification4
- DNA-Seq4
- DNase-Seq4
- High throughput sequencing4
- High-throughput sequencing4
- NGS4
- NGS data analysis4
- Next gen sequencing4
- Next generation sequencing4
- Panels4
- Primer walking4
- Sanger sequencing4
- Sequence analysis4
- Sequence databases4
- Sequences4
- Sequencing4
- Targeted next-generation sequencing panels4
- Bayesian methods3
- Biostatistics3
- Descriptive statistics3
- Gaussian processes3
- Inferential statistics3
- Markov processes3
- Multivariate statistics3
- Population genomics3
- Probabilistic graphical model3
- Probability3
- Statistics3
- Statistics and probability3
- Active learning2
- Data curation2
- Data privacy2
- Data provenance2
- Data security2
- Data submission, annotation, and curation2
- Database curation2
- Drug discovery2
- Ensembl learning2
- Exometabolomics2
- Kernel methods2
- Knowledge representation2
- LC-MS-based metabolomics2
- MS-based metabolomics2
- MS-based targeted metabolomics2
- MS-based untargeted metabolomics2
- Machine learning2
- Marine biology2
- Mass spectrometry-based metabolomics2
- Metabolites2
- Metabolome2
- Metabolomics2
- Metabonomics2
- MicroRNA sequencing2
- NMR-based metabolomics2
- Neural networks2
- RNA sequencing2
- RNA-Seq2
- RNA-Seq analysis2
- Recommender system2
- Reinforcement learning2
- Small RNA sequencing2
- Small RNA-Seq2
- Small-Seq2
- Supervised learning2
- Transcriptome profiling2
- Unsupervised learning2
- WTSS2
- Whole transcriptome shotgun sequencing2
- miRNA-seq2
- Aerobiology1
- Antigens1
- Behavioural biology1
- Biological modelling1
- Biological rhythms1
- Biological science1
- Biological system modelling1
- Biology1
- Biomathematics1
- Biome sequencing1
- Biomedical science1
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Operation
- Data handling5
- File handling5
- File processing5
- Processing5
- Report handling5
- Utility operation5
- Data deposition3
- Data submission3
- Database deposition3
- Database submission3
- Deposition3
- Submission3
- Alternative splicing analysis1
- Alternative splicing detection1
- Alternative splicing prediction1
- Cartography1
- Design1
- Differential splicing analysis1
- Docking simulation1
- Macromolecular docking1
- Mapping1
- Mathematical modelling1
- Modelling and simulation1
- Molecular docking1
- Molecular dynamics1
- Molecular dynamics simulation1
- Molecular surface analysis1
- Protein dynamics1
- Protein secondary structure visualisation1
- RNA secondary structure visualisation1
- Sequencing QC1
- Sequencing quality assessment1
- Sequencing quality control1
- Splice transcript prediction1
- Split read mapping1
- Split-read mapping1
- Structure database search1
- Structure rendering1
- Structure visualisation1
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Venue
- SIB278
- Earlham Institute (EI), Colney Lane5
- University of Ljubljana, Faculty of Medicine5
- European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Wellcome Genome Campus2
- Institute of Organic Chemistry and Biochemistry AS CR, 2, Flemingovo náměstí2
- Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande2
- Palacky University Olomouc (UPOL) Faculty of Science tř. 17. listopadu 12 rooms 3.002 (tutorials/challenge), 3.003 (lectures) Olomouc 77900 Czech Republic2
- 17. listopadu, 17. listopadu1
- BEST WESTERN PREMIER Hotel International Brno, Husova 16, 602 00 Brno, Czech Republic1
- Belval Campus, Luxembourg (more detailed information on the venue will be send to registered participants before the workshop)1
- CCMAR - Center of Marine Sciences1
- CIIMAR-Madeira - Interdisciplinary Centre of Marine and Environmental Research of Madeira1
- Cirad, 389, Avenue Agropolis1
- De Bijloke, Bijlokekaai 7, 7, Bijlokekaai1
- Gaustadalléen 23, 23, Gaustadalléen1
- ITQB NOVA, Avenida da República1
- Instituto Gulbenkian de Ciência, Oeiras, PT1
- Instituto de Medicina Molecular (IMM), Avenida Professor Egas Moniz1
- Institutt for pedagogikk og lærerutdanning (Faculty of Humanities), Teorifagbygget-Hus 11
- KU Leuven Universiteitshal, 22, Naamsestraat1
- La Pedrera, 92, Passeig de Gràcia1
- Leuven1
- MSTC, Sherrington Building, University of Liverpool1
- Melbourne1
- Music Center De Bijloke, 2, Jozef Kluyskensstraat1
- Ole-Johan Dahls hus, 23B, Gaustadalléen1
- Online via Zoom1
- PC-COLLEGE Berlin, 78, Stresemannstraße1
- Palacky University Olomouc (UPOL) Faculty of Science tř. 17. listopadu 12, Olomouc 77900, Czech Republic rooms 3.002 (tutorials/challenge), 3.003 (lectures)1
- Postdoc Centre, 16, Mill Lane1
- Rikli Balance Hotel, Cankarjeva cesta 4, SI-4260 Bled, Slovenia1
- Science and Technology Park of Sardinia, Pula, Italy1
- Skalský Court Hotel, Lísek1
- Technická 1903/3, 3, Technická1
- The Alan Turing Institute, 96, Euston Road1
- University of Cambridge, Trinity Ln1
- University of Ljubljana, Faculty of Medicine, Institute for Biostatistics and Medical Informatics, Vrazov Trg 2, SI-1000, Ljubljana, Slovenia1
- University of Ljubljana, Faculty of Medicine, Vrazov trg 2, SI-1000 Ljubljana, Slovenia1
- University of Milano-Bicocca, Building U7, Lab 7151
- University of Minho - Campus of Gualtar, Rua da Universidade1
- Università degli Studi di Padova - Casa della Gioventù, Via Rio Bianco,121
- Via Principessa Margherita, 461
- Vila Lanna, V Sadech 11
- Virtual (Slack)1
- iad Pc-Pool1
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City
- Lausanne70
- Basel38
- Streamed from Lausanne30
- Streamed from Basel28
- Bern20
- Streamed17
- Zurich10
- Streamed from Bern9
- Streamed from Geneva9
- Ljubljana7
- Streamed from Basel and Lausanne6
- Norwich5
- Oeiras4
- Streamed from Basel and Zurich4
- Streamed from Lausanne & Geneva4
- Streamed from Lausanne and Basel4
- Cambridge3
- Fribourg3
- Olomouc3
- Prague3
- Streamed from Grenoble and Geneva3
- Faro2
- Geneva2
- Gent2
- Leuven2
- Oslo2
- Streamed from Geneva, Grenoble, Lyon, Tokyo and Wa2
- Barcelona1
- Berlin1
- Bern or Lausanne1
- Bienne/Biel1
- Bled1
- Blended - Streamed and videos1
- Braga1
- Brno1
- Bystřice nad Pernštejnem1
- Davos1
- Esch-sur-Alzette1
- Lausanne or Streamed1
- Lausanne or streamed1
- Leipzig1
- Leysin, Switzerland1
- Lisboa1
- Liverpool1
- London1
- Lyon1
- Melbourne1
- Milan1
- Montferrier-sur-Lez (Montpellier area)1
- Olomouc 91
- Prague 61
- Procida1
- Pula1
- Schwarzenberg1
- Sempach1
- Streamed from Greece and Mauritius1
- Streamed from Lausanne and Barcelona1
- Streamed from Muttenz1
- Streamed from Sweden, Switzerland, Germany and UK1
- Streamed from the University of Duisburg-Essen1
- Streaming from Lausanne1
- Tromsø1
- Villars-sur-Ollon1
- Zurich or streamed1
- streamed from multiple locations1
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Organizer
- SIB Swiss Institute of Bioinformatics (https://ror.org/002n09z45)13
- Earlham Institute6
- ELIXIR Norway5
- BioData.pt4
- Karel Berka, Pavel Polishchuk4
- ELIXIR Slovenia3
- ELIXIR Slovenia, ELIXIR Sweden, NBIS3
- BioExcel2
- Birmingham Metabolomics Training Centre2
- ELIXIR CZ, IOCB Prague2
- ELIXIR Slovenia, University of Ljubljana, Faculty of Medicine2
- EMBO2
- Monique Zahn2
- Pedro Fernandes2
- VIB2
- ecSeq Bioinformatics GmbH2
- Arctic University of Norway, ELIXIR Norway, ELIXIR Slovenia1
- BioData.pt, ITQB NOVA1
- BioData.pt, iMM - Instituto de Medicina Molecular João Lobo Antunes1
- CHARME, ELIXIR Slovenia, NIB1
- CITIUS1
- Centro de Ciencias do Mar (CCMAR)1
- Cymon J. Cox, CCMAR1
- Daniele Parisi, Cedric Lood, Nikolina Šoštarić, Vera Van Noort1
- Department of Informatics and Chemistry, University of Chemistry and Technology & CZ-OPENSCREEN: National infrastructure of chemical biology1
- Dr Jim Procter and Dr Dan Rigden1
- ELIXIR Italy1
- ELIXIR PT, Instituto Gulbenkian1
- ELIXIR SI, University of Ljubljana, Faculty of Medicine1
- ELIXIR UiO node1
- ELIXIR-BE, ELIXIR-FR, ELIXIR-NO, ELIXIR-PT, ELIXIR-SE, ELIXIR-SI1
- ELIXIR-IT (L. Le Pera, V. Colonna, A. Via), Carpentries Italia1
- Elixir CZ, UCT Prague, Data Carpentry1
- Entrepeneurial Postdocs of Cambridge and ELIXIR-UK1
- Gabriella Rustici1
- Institute of Organic Chemistry and Biochemistry AS CR1
- Jozef Stefan Institute, Ljubljana, Slovenia1
- Luxembourg Centre for Systems Biomedicine1
- Master's in Bioinformatics - University of Bologna1
- Monash Bioinformatics Platform1
- NORBIS, the Norwegian national research school in bioinformatics, biostatistics and systems biology1
- Olivier Sand1
- Open Life Science1
- SIB Swiss Institute of Bioinformatics1
- University of Cambridge / Alan Turing Institute1
- VIB Conferences1
- de.NBI1
- ecseq Bioinformatics GmbH1
- [email protected]1
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Sponsor
- ELIXIR CZ4
- Centre for Digital Life Norway3
- RDA-Portugal3
- ELIXIR2
- ELIXIR EXCELERATE2
- Palacky University Olomouc2
- Palacký University Olomouc2
- CCMAR1
- UALG1
- Aurora1
- COST1
- Data & Software Carpentry1
- EASI-genomics1
- ELIXIR-CONVERGE1
- EMBO1
- Elixir Belgium1
- European Union1
- HPC Carpentry1
- INRA1
- INTERREG V-A Italy-Slovenia 2014-2020 project TRAIN1
- NBIS - National Bioinformatics Infrastructure Sweden1
- NORBIS1
- National Research Council of Italy1
- Oeiras Valley1
- One Nucleus1
- Repositive1
- Takara1
- Twist Bioscience1
- University of Dundee1
- de.NBI1
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Target audience
- PhD students
- Graduate students865
- Institutions and other external Institutions or individuals570
- Postdocs and Staff members from the University of Cambridge570
- Academics293
- Industry291
- PhD287
- Researchers133
- Everyone is welcome to attend the courses53
- please review the policies.52
- Life Science Researchers48
- Biologists35
- bioinformaticians33
- as well as other departmental training within the University of Cambridge (potentially under a different name) so participants who have attended statistics training elsewhere should check before applying.29
- This course is included as part of several DTP and MPhil programmes24
- <span style="color:#FF0000">After you have booked a place22
- if you are unable to attend any of the live sessions and would like to work in your own time22
- including for registered university students.<span style="color:#FF0000">22
- please email the Team as Attendance will be taken on all courses. A charge is applied for non-attendance22
- Beginner20
- Master students20
- PhD Students18
- life scientists17
- post-docs17
- All postgraduates16
- This is aimed at life scientists with little or no experience in machine learning and that are looking at implementing these approaches in their research.16
- It may be particularly useful for those who have attended other Facility Courses and now need to process their data on a Linux server. It will also benefit those who find themselves using their personal computers to run computationally demanding analysis/simulations and would like to learn how to adapt these to run on a HPC.15
- Students15
- This course is aimed at students and researchers of any background.15
- We assume no prior knowledge of what a HPC is or how to use it.15
- mixed audience15
- PhD candidates14
- Professors13
- Bioinformaticians and wet-lab biologists who can program12
- Biologists, Genomicists, Computer Scientists11
- Existing R users who are not familiar with dplyr and ggplot211
- Graduate Students11
- Those with programming experience in other languages that want to know what R can offer them11
- PhD candidate10
- Post Docs9
- Wet-lab researchers and bioinformaticians9
- data steward / data manager9
- Bioinformaticians8
- Technicians8
- data managers8
- data stewards8
- postdoctoral researchers8
- Beginners7
- Researchers who are applying or planning to apply image analysis in their research7
- The course is aimed at biologists interested in microbiology7
- This workshop is aimed at researchers interested in proteins7
- Undergraduate students7
- network analysis7
- Clinicians6
- Postdoctoral Researchers6
- Postdoctoral researchers6
- Postgraduate students6
- Senior scientist/ Principal investigator6
- The course is aimed primarily at mid-career scientists – especially those whose formal education likely included statistics6
- Trainers6
- Training Designers6
- but who have not perhaps put this into practice since.6
- protein-protein interactions and related areas6
- researchers6
- Biologists and bioinformaticians5
- Data Managers5
- Engineers5
- Life sciences5
- Masters students5
- Note that we will not cover specific topics in phylogenomics (whole-genome phylogenies) or bacterial genomics.5
- Postdoctoral Fellows5
- The course is open to Graduate students5
- This course is - in abbreviated form - included as part of several DTP and MPhil programmes5
- This course is aimed at researchers with no prior experience in phylogenetic analysis who would like an introduction to the foundations of building phylogenies from relatively small sequences (viral genomes and/or targeted regions of eukaryotic genomes).5
- Training instructors5
- but not essential as we will walk through a MS typical experiment and data as part of learning about the tools.5
- project manager5
- software developers, bioinformaticians5
- Anyone intersted in GWAS and using the H3Africa genotyping chip4
- Anyone who is using sequencing as part of their work and/or research.4
- Bioinformaticians and wet-lab biologists who can program in Perl, Python or R.4
- Biomedical researchers4
- DMP writers4
- Data stewards4
- Early Career Researcher4
- Early Career Researchers (ECRs)4
- Familiarity with mass spectrometry or proteomics in general is desirable4
- Life Scientists4
- Molecular Biologists4
- Novice users of HPC and anyone who expects to need to use HPC systems at some stage in their research4
- PI4
- Pathologists4
- Post docs4
- Principal Investigators4
- Researcher in life sciences4
- Researchers who want to extract quantitative information from microscopy images4
- Scientists4
- The course is targeted to either proteomics practitioners or data analysts/bioinformaticians that would like to learn how to use R to analyse proteomics data.4
- This course is aimed at researchers with an interest in metabolomics and its applications4
- This workshop is aimed at researchers who need to undertake sequence searching as part of their work4
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