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Content provider
- Edinburgh Genomics20
- iAnn2
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Keyword
- Gene expression5
- Linux5
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- RNAseq4
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- Beginner1
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Scientific topic
- Bioinformatics2
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Event type
- Workshops and courses22
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Country
- United Kingdom2
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Organizer
- Edinburgh Genomics
- Software Carpentry1704
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- Martin Himly, PLUS, Chair of EU NanoSafety Cluster WG-A10
- Australian National University8
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- South Green (http://www.southgreen.fr)8
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- AuBi (https://mesocentre.uca.fr/projets-associes/plateforme-aubi), AuBi (https://mesocentre.uca.fr/projets-associes/plateforme-aubi/), Mésocentre Clermont-Auvergne (https://mesocentre.uca.fr/)7
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- <a href="http://biont-training.eu/">BioNT</a> (BIO Network for Training) 3
- ABiMS (http://abims.sb-roscoff.fr/), AVIESAN (http://www.aviesan.fr/en), BiGEst (http://bigest.unistra.fr/), IFB (https://www.france-bioinformatique.fr/), IFB Core (https://www.france-bioinformatique.fr/), MIGALE (https://migale.inrae.fr)3
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- ELIXIR Slovenia, ELIXIR Sweden, NBIS3
- EMBI3
- European Genetics Foundation3
- European Joint Programme on Rare Diseases (EJP-RD), Istituto Superiore di Sanità of Italy3
- GMOD3
- Genotoul-bioinfo (http://bioinfo.genotoul.fr/), MIAT (https://miat.inrae.fr/site/Accueil)3
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Target audience
- Graduates, postgraduates, and PIs, who are using, or planning to use, RNA-seq technology in their research and want to learn how to process and analyse RNA-seq data.3
- Graduates, postgraduates, and PIs, who are using, or planning to use, the statistical software R to manipulate and analyse NGS and other data in their research. This is an introductory level course: no prior experience of R is necessary before starting the workshop.3
- Graduates, postgraduates, and PIs, without any previous command-line experience, who want to learn to use the Linux command-line in order to be able to work with large data files.3
- Graduates, postgraduates, and PIs, who are using, or planning to use, single cell RNA-seq technology in their research and want to learn how to process and analyse single cell RNA-seq data.2
- This course is intended for researchers who need to analyse genomic data in order to call genomic variants. Aside from a basic understanding of molecular biology, attendees must have a working knowledge of how to use the Linux BASH command line; our 1-day 'Linux for bioinformatics' course is a suitable background.2
- Academics, post-graduate students, and anyone looking to learn this essential bioinformatics skill.1
- Graduates, postgraduates, PIs and anyone who wants to learn how to prepare DNA libraries for short read sequencing.1
- Note, to ensure a high quality of training for everyone, we will be limiting places for those with no/limited lab experience to 2 for this course.1
- PhD, Postdocs1
- PhD, Postdocs, Anyone starting to analyse long read data1
- This course is for researchers who need to automate data analysis tasks for biological research involving next-generation sequence data, for example RNA-seq analysis, variant calling, CHIP-Seq, bacterial genome assembly, etc.1
- This workshop is aimed at researchers and technical workers with a background in biology who want to learn programming. The syllabus has been planned with complete beginners in mind; people with previous programming experience are welcome to attend as a refresher but may find the pace a bit slow. If in doubt, take a look at the detailed session content below.1
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