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Content provider
- ELIXIR Slovenia16
- ELIXIR Estonia12
- ELIXIR Norway10
- Centre for Digital Life Norway7
- Barcelona Supercomputing Center (BSC)6
- NBIS4
- ELIXIR Luxembourg3
- INB: Spanish National Bioinformatics Institute3
- Software Carpentry3
- University of Cambridge Bioinformatics Training3
- ELIXIR-SI eLearning Platform (EeLP)2
- ELIXIR: The Czech Republic Node2
- BioData.pt1
- ELIXIR1
- ELIXIR Portugal1
- European Bioinformatics Institute (EBI)1
- Galaxy Project1
- IFB French Institute of Bioinformatics1
- NORBIS, the Norwegian national research school in bioinformatics, biostatistics and systems biology1
- UCL Engineering1
- iAnn1
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Keyword
- DMP26
- ELIXIR-CONVERGE24
- EeLP20
- eLearning20
- CONVERGE19
- metadata15
- Data management14
- FAIR13
- data publication13
- training11
- Data management plan10
- data management10
- data protection10
- storage10
- Identifiers9
- NeLS9
- data management plan9
- life sciences9
- Compliance8
- TSD8
- Bioinformatics7
- DMP tools7
- Data visualisation7
- FAIR principles7
- Genomics7
- Git7
- RDM7
- Computer science6
- Data visualization6
- Workshop6
- bioinformatics6
- DMP evaluation5
- DMP templates5
- Data management planning5
- Data storage5
- R5
- data life cycle - analyse5
- data life cycle - plan5
- data life cycle - preserve5
- data life cycle - process5
- data life cycle - share5
- genomics5
- research data management5
- template5
- tools5
- Command line4
- Data Visualization4
- Data managment plan4
- RStudio4
- Shell4
- competency4
- data FAIRness4
- data life cycle - collect4
- data life cycle - reuse4
- data organisation4
- data stewardship4
- evaluation4
- licensing4
- sensitive4
- sensitive data4
- Assembly3
- R-programming3
- Computational Biology3
- Data Protection3
- OpenRefine3
- Programming3
- Python3
- README3
- Software Carpentry3
- Training3
- Unix/Linux3
- Version control3
- data cleaning3
- data life cycle3
- data quality3
- data visualisation3
- e-learning3
- on-line3
- ATAC-seq2
- Artificial Intelligence2
- ChIP-Seq2
- Coding2
- Data Management2
- Data Stewardship Wizard2
- Data analysis2
- FAIR data2
- Galaxy2
- GitHub2
- HPC2
- Healthcare2
- Metadata2
- Open science2
- Precision Medicine2
- R language2
- R studio2
- Shell script2
- Software skills2
- SoftwareCarpentry2
- Statistics2
- Unix Shell2
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Scientific topic
- Data management25
- Metadata management25
- FAIR data16
- Findable, accessible, interoperable, reusable data16
- Exomes13
- Genome annotation13
- Genomes13
- Genomics13
- Personal genomics13
- Synthetic genomics13
- Viral genomics13
- Whole genomes13
- Bioinformatics12
- Data curation12
- Database curation12
- Cloud computing11
- Computer science11
- HPC11
- High performance computing11
- High-performance computing11
- Research data management (RDM)8
- Data clean-up7
- Data cleaning7
- Data integrity7
- Data provenance7
- Data quality7
- Data quality management7
- Data submission, annotation, and curation7
- Data governance6
- Data stewardship6
- Data archival5
- Data archiving5
- Data curation and archival5
- Data identity and mapping5
- Data preservation5
- Pipelines5
- Research data archiving5
- Software integration5
- Tool integration5
- Tool interoperability5
- Workflows5
- Active learning3
- Biomathematics3
- Computational biology3
- Data rendering3
- Data visualisation3
- Ensembl learning3
- Kernel methods3
- Knowledge representation3
- Machine learning3
- Mathematical biology3
- Neural networks3
- Recommender system3
- Reinforcement learning3
- Supervised learning3
- Theoretical biology3
- Unsupervised learning3
- Biomedical science2
- Biomedical sciences2
- Chemical informatics2
- Cheminformatics2
- Chemoinformatics2
- Comparative transcriptomics2
- Health science2
- Informatics2
- Information management2
- Information science2
- Knowledge management2
- Transcriptome2
- Transcriptomics2
- Algorithms1
- Bayesian methods1
- BioNLP1
- Biological modelling1
- Biological processes1
- Biological sequences1
- Biological system modelling1
- Biomarkers1
- Biome sequencing1
- Biostatistics1
- Bottom-up proteomics1
- Chromosome walking1
- Clone verification1
- Comparative genomics1
- Computational chemistry1
- Computer programming1
- DNA-Seq1
- DNase-Seq1
- Data integration1
- Data integration and warehousing1
- Data structures1
- Data warehousing1
- Descriptive statistics1
- Diagnostic markers1
- Diffraction experiment1
- Discovery proteomics1
- Drug discovery1
- Evolution1
- Evolutionary biology1
- Gaussian processes1
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Operation
- Data handling21
- File handling21
- File processing21
- Processing21
- Report handling21
- Utility operation21
- Data deposition15
- Data submission15
- Database deposition15
- Database submission15
- Deposition10
- Submission10
- Data brokering5
- Data deposition brokering5
- Data formatting3
- Data reformatting3
- File format conversion3
- File formatting3
- File reformatting3
- Format conversion3
- Data filtering2
- Data management planning2
- File format validation2
- Format validation2
- Sequence filtering2
- rRNA filtering2
- Annotation1
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Venue
- University of Ljubljana, Faculty of Medicine5
- Delta building, Narva mnt 18 room 2005, Tartu3
- Georg Sverdrups hus, 39 Moltke Moes vei3
- Narva mnt 18, room 20213
- Online3
- Auditorium 1019, Narva mnt 18 (UT Delta Centre)2
- Auditorium 2005 (the Linux classroom), Narva mnt 18 (UT Delta Centre)2
- Department of Informatics, 23B Gaustadalléen2
- Institute of Organic Chemistry and Biochemistry AS CR, 2, Flemingovo náměstí2
- Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande2
- Leuven2
- Narva mnt 18, 18 Narva maantee2
- Narva mnt 18, room 10222
- Narva mnt 18, room 20342
- Online via Zoom2
- University of Cambridge, Trinity Ln2
- Uppsala University, SciLifeLab, BMC, Husargatan 3, Uppsala2
- Akadeemia tee 231
- Barcelona Supercomputing Center (BSC)1
- Bergen1
- Branišovská 1160/31, 31, Branišovská1
- Centro Nacional de Investigaciones Oncológicas, 3, Calle de Melchor Fernández Almagro1
- Cirad, 389, Avenue Agropolis1
- Delivered online virtually, with face-to-face sessions on Teams.1
- Delta building, Narva mnt 18 room 1008, Tartu1
- Delta building, Narva mnt 18 room 2006, Tartu1
- Earlham Institute (EI), Colney Lane1
- Escuela Técnica Superior de Ingeniería Informática, 35, Bulevar Louis Pasteur1
- European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Wellcome Genome Campus1
- Facultad de Medicina de la Universidad de Granada, 11, Avenida de la Investigación1
- Faculty of Law, University of Ljubljana, Poljanski nasip 21
- Faro1
- Gaustadalléen 23, 23, Gaustadalléen1
- Georg Sverdrups hus, Moltke Moes vei, Oslo, Norway1
- Haakon Sheteligs plass 7, Haakon Sheteligs plass1
- Hilton Atlanta Airport, 1031, Virginia Avenue1
- Hotel Berlin Berlin, 17, Lützowplatz1
- INESC, 9 Rua Alves Redol1
- Institutt for pedagogikk og lærerutdanning (Faculty of Humanities), Teorifagbygget-Hus 11
- La Pedrera, 92, Passeig de Gràcia1
- Luxembourg Learning Centre University of Luxembourg1
- Melbourne1
- Narva mnt 18, 18 Narva maantee ROOM 20481
- Narva mnt 18, room 20031
- Narva mnt 18, room 20051
- Narva mnt 18, room 20401
- Naturalis Biodiversity Center and Level Leiden1
- Ole-Johan Dahl's House, 23B Gaustadalléen1
- Ole-Johan Dahls hus, 23B Gaustadalléen1
- Postdoc Centre, 16, Mill Lane1
- R. Q.ta Grande 6, 6, Rua Quinta Grande1
- Rikli Balance Hotel, Cankarjeva cesta 4, SI-4260 Bled, Slovenia1
- Rävala pst 10, 10 Rävala puiestee1
- SciLifeLab - Air&Fire, Tomtebodavägen 23 A1
- Skalský Court Hotel, Lísek1
- TF fløy III, 1430 Kajaveien1
- Tallinn University, 25 Narva maantee1
- UPC Campus Nord, 1 Carrer de Jordi Girona1
- University of Liverpool, Brownlow Hill1
- University of Milano Bicocca1
- University of Milano-Bicocca, Building U7, Lab 7151
- University of Tromsø1
- Vila Lanna, V Sadech 11
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City
- Tartu26
- Oslo9
- Ljubljana6
- Tallinn4
- Barcelona3
- Cambridge3
- Oeiras3
- Prague3
- Bergen2
- Leuven2
- Liverpool2
- Tromsø2
- Uppsala2
- Atlanta1
- Berlin1
- Bled1
- Bystřice nad Pernštejnem1
- Esch-sur-Alzette1
- Faro1
- Granada1
- Leiden1
- Lisboa1
- Madrid1
- Melbourne1
- Milan1
- Montferrier-sur-Lez (Montpellier area)1
- Málaga1
- Norwich1
- Stockholm1
- online1
- Ås1
- České Budějovice1
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Organizer
- ELIXIR Estonia48
- ELIXIR Norway8
- ELIXIR Slovenia, ELIXIR Sweden, NBIS3
- NBIS3
- The workshop is provided by ELIXIR Oslo as part of an extended event organised by Digital Scholarship Center (DSC), USIT, Carpentry@UiO, Coderefinery, dScience, Simula, Data Managers Network at UiO, ELIXIR Oslo, Norway's Reproducibility Network (norrn) and University of Oslo Library3
- CITIUS2
- Computational Biology Facility, University of Liverpool: https://www.liverpool.ac.uk/computational-biology-facility/2
- ELIXIR CZ, IOCB Prague2
- ELIXIR Slovenia2
- Earlham Institute2
- The workshop is provided by ELIXIR Oslo as part of an extended event organised by the Student Committee of the Centre for Bioinformatics at the University of Oslo in collaboration with the ISCB Regional Student group in Norway2
- Bioinfo4Women programme of the Life Sciences Department at the Barcelona Supercomputing Center (BSC), BBMRI-ERIC, INB/ELIXIR-ES, EATRIS.1
- Allied Academies1
- Arctic University of Norway, ELIXIR Norway, ELIXIR Slovenia1
- BioData.pt | ELIXIR Portugal1
- CHARME, ELIXIR Slovenia, NIB1
- CSUC / CERCA1
- Carpentries Italia, ELIXIR-IT1
- Centre for Digital Life Norway and ELIXIR-Norway1
- Daniele Parisi, Cedric Lood, Nikolina Šoštarić, Vera Van Noort1
- Data Management unit, Life Sciences dept and Earth Sciences dept of the Barcelona Supercomputing Center (BSC).1
- Department of Informatics and Chemistry, University of Chemistry and Technology & CZ-OPENSCREEN: National infrastructure of chemical biology1
- ELIXIR Germany and Beacon community1
- ELIXIR Italy1
- ELIXIR Norway, Digital Life Norway1
- ELIXIR Norway, University Library of Bergen, NRIS, Centre for Digital Life Norway1
- ELIXIR PT, Instituto Gulbenkian1
- ELIXIR SI, University of Ljubljana, Faculty of Medicine1
- ELIXIR-BE, ELIXIR-FR, ELIXIR-NO, ELIXIR-PT, ELIXIR-SE, ELIXIR-SI1
- ELIXIR-Norway1
- ERAnet - NEURON1
- Elixir-Luxembourg1
- Emma Lazzeri, Loredana Le Pera, Ivan Miçetic, Gina Pavone, Allegra Via1
- Entrepeneurial Postdocs of Cambridge and ELIXIR-UK1
- Escuela Técnica Superior de Ingeniería Informática1
- FDO Forum1
- Galaxy Community and ELIXIR1
- INB/ELIXIR-ES and CNIO1
- IOCB Prague, University of Ljubljana, Faculty of Medicine, ELIXIR-FI1
- Institute of Organic Chemistry and Biochemistry AS CR1
- Institute of Plant Molecular Biology, České Budějovice, Czech Republic1
- Instituto Gulbenkian, ELIXIR Portugal, GOBLET1
- Jozef Stefan Institute, Ljubljana, Slovenia1
- Luxembourg Centre for Systems Biomedicine1
- Master's in Bioinformatics - University of Bologna1
- Monash Bioinformatics Platform1
- NBIS, SciLifeLab1
- NBIS, SciLifeLab Data Centre1
- NORBIS, the Norwegian national research school in bioinformatics, biostatistics and systems biology1
- Olivier Sand1
- PRACE1
- Pedro Fernandes1
- Rita Castilho, Center for Marine Sciences1
- Software Carpentry1
- The workshop is provided by the Oslo node of ELIXIR Norway as part of an extended event organised by Digital Scholarship Center (DSC), USIT, Carpentry@UiO, Coderefinery, dScience, Simula, Data Managers Network at UiO, ELIXIR Oslo, Norway's Reproducibility Network (norrn) and University of Oslo Library1
- The workshop is provided by the Oslo node of ELIXIR Norway as part of an extended event organised by the Student Committee of the Centre for Bioinformatics at the University of Oslo in collaboration with the ISCB Regional Student group in Norway1
- UCL Science and Technology Studies1
- University of Cambridge1
- University of Granada, Fundación Progreso y Salud (FPS) and the Spanish National Bioinformatics Institute (INB/ELIXIR-ES)1
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Sponsor
- Centre for Digital Life Norway7
- ELIXIR Converge5
- ELIXIR Norway3
- ELIXIR-CONVERGE2
- BioMedData1
- CSUC1
- Digital Life Norway1
- Digital Scholarship Centre (University of Oslo)1
- ELIXIR1
- ELIXIR EXCELERATE1
- ELIXIR: The Czech Republic Node1
- EOSC-Life1
- EXCELERATE1
- Elixir Belgium1
- Euromarine1
- European Union1
- FDO Forum1
- INB/ELIXIR-ES1
- INRA1
- INTERREG V-A Italy-Slovenia 2014-2020 project TRAIN1
- ISCIII1
- NBIS - National Bioinformatics Infrastructure Sweden1
- NORBIS1
- National Research Council of Italy1
- Oeiras Valley1
- One Nucleus1
- Repositive1
- Spanish National Bioinformatics Institute (INB/ELIXIR-ES)1
- Spanish Supercomputing Network (RES)1
- University of Bergen1
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Target audience
- Researchers
- Graduate students865
- Institutions and other external Institutions or individuals570
- Postdocs and Staff members from the University of Cambridge570
- PhD students355
- Academics293
- Industry291
- PhD287
- Everyone is welcome to attend the courses53
- please review the policies.52
- Life Science Researchers48
- Biologists35
- bioinformaticians33
- as well as other departmental training within the University of Cambridge (potentially under a different name) so participants who have attended statistics training elsewhere should check before applying.29
- This course is included as part of several DTP and MPhil programmes24
- <span style="color:#FF0000">After you have booked a place22
- if you are unable to attend any of the live sessions and would like to work in your own time22
- including for registered university students.<span style="color:#FF0000">22
- please email the Team as Attendance will be taken on all courses. A charge is applied for non-attendance22
- Beginner20
- Master students20
- PhD Students18
- life scientists17
- post-docs17
- All postgraduates16
- This is aimed at life scientists with little or no experience in machine learning and that are looking at implementing these approaches in their research.16
- It may be particularly useful for those who have attended other Facility Courses and now need to process their data on a Linux server. It will also benefit those who find themselves using their personal computers to run computationally demanding analysis/simulations and would like to learn how to adapt these to run on a HPC.15
- Students15
- This course is aimed at students and researchers of any background.15
- We assume no prior knowledge of what a HPC is or how to use it.15
- mixed audience15
- PhD candidates14
- Professors13
- Bioinformaticians and wet-lab biologists who can program12
- Biologists, Genomicists, Computer Scientists11
- Existing R users who are not familiar with dplyr and ggplot211
- Graduate Students11
- Those with programming experience in other languages that want to know what R can offer them11
- PhD candidate10
- Post Docs9
- Wet-lab researchers and bioinformaticians9
- data steward / data manager9
- Bioinformaticians8
- Technicians8
- data managers8
- data stewards8
- postdoctoral researchers8
- Beginners7
- Researchers who are applying or planning to apply image analysis in their research7
- The course is aimed at biologists interested in microbiology7
- This workshop is aimed at researchers interested in proteins7
- Undergraduate students7
- network analysis7
- Clinicians6
- Postdoctoral Researchers6
- Postdoctoral researchers6
- Postgraduate students6
- Senior scientist/ Principal investigator6
- The course is aimed primarily at mid-career scientists – especially those whose formal education likely included statistics6
- Trainers6
- Training Designers6
- but who have not perhaps put this into practice since.6
- protein-protein interactions and related areas6
- researchers6
- Biologists and bioinformaticians5
- Data Managers5
- Engineers5
- Life sciences5
- Masters students5
- Note that we will not cover specific topics in phylogenomics (whole-genome phylogenies) or bacterial genomics.5
- Postdoctoral Fellows5
- The course is open to Graduate students5
- This course is - in abbreviated form - included as part of several DTP and MPhil programmes5
- This course is aimed at researchers with no prior experience in phylogenetic analysis who would like an introduction to the foundations of building phylogenies from relatively small sequences (viral genomes and/or targeted regions of eukaryotic genomes).5
- Training instructors5
- but not essential as we will walk through a MS typical experiment and data as part of learning about the tools.5
- project manager5
- software developers, bioinformaticians5
- Anyone intersted in GWAS and using the H3Africa genotyping chip4
- Anyone who is using sequencing as part of their work and/or research.4
- Bioinformaticians and wet-lab biologists who can program in Perl, Python or R.4
- Biomedical researchers4
- DMP writers4
- Data stewards4
- Early Career Researcher4
- Early Career Researchers (ECRs)4
- Familiarity with mass spectrometry or proteomics in general is desirable4
- Life Scientists4
- Molecular Biologists4
- Novice users of HPC and anyone who expects to need to use HPC systems at some stage in their research4
- PI4
- Pathologists4
- Post docs4
- Principal Investigators4
- Researcher in life sciences4
- Researchers who want to extract quantitative information from microscopy images4
- Scientists4
- The course is targeted to either proteomics practitioners or data analysts/bioinformaticians that would like to learn how to use R to analyse proteomics data.4
- This course is aimed at researchers with an interest in metabolomics and its applications4
- This workshop is aimed at researchers who need to undertake sequence searching as part of their work4
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Language
- English4
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