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Content provider
- European Bioinformatics Institute (EBI)27
- Australian BioCommons25
- ELIXIR Slovenia18
- ELIXIR: The Czech Republic Node7
- BioData.pt6
- ELIXIR-SI eLearning Platform (EeLP)6
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- INB: Spanish National Bioinformatics Institute3
- Software Carpentry3
- Centre for Digital Life Norway2
- ELIXIR Norway2
- Jalview2
- University of Cambridge Bioinformatics Training2
- FAIRDOM1
- Foundation for Research & Technology Hellas / Institute of Chemical Engineering Sciences (FORTH/ICE-HT)1
- NORBIS, the Norwegian national research school in bioinformatics, biostatistics and systems biology1
- NRIS1
- SIB Swiss Institute of Bioinformatics1
- SciLifeLab1
- Thermo Fisher Scientific1
- University of Bradford1
- de.KCD1
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Keyword
- HDRUK27
- EeLP26
- eLearning26
- training14
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- bioinformatics12
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- life sciences10
- Workflows9
- genomics8
- Python7
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- Git6
- Software Carpentry6
- Train the trainer6
- molecular modelling6
- DMP5
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- QSAR5
- in silico drug design5
- pharmacophore5
- Docker4
- Genetic Variation4
- Metabolomics4
- R Programming4
- Training4
- TtT4
- Unix/Linux4
- data organisation4
- data publication4
- data stewardship4
- metadata4
- molecular docking4
- storage4
- Assembly3
- CWL3
- Data analysis3
- Data carpentry3
- Data managment plan3
- Galaxy3
- Genomics3
- PDBe3
- R3
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- Single Cell Genomics3
- Transcriptomics3
- Unix Shell3
- Variant calling3
- data quality3
- ethical issues3
- high-performance computing3
- nf-core3
- Bioconductor2
- ChIP-seq2
- Chemical biology (chemical-biology)2
- Containers2
- Course design2
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- De novo2
- Deep learning2
- Educational psychology2
- Gene Expression2
- HPC2
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- PDBe-KB2
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- Shell2
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- Teaching2
- TtT, Train the Trainer, Educational psychology, cognitive science, teaching practices 2
- Variant detection2
- Version control2
- assembly2
- computational methods2
- computer-science2
- drug discovery2
- genome annotation2
- machine learning2
- next-generation sequencing2
- omics data2
- open access2
- pedagogy2
- scRNAseq2
- sustainability2
- teaching practices2
- virtual screening2
- DSW1
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Scientific topic
- Bioinformatics27
- Data management20
- Exomes20
- Genome annotation20
- Genomes20
- Genomics20
- Metadata management20
- Personal genomics20
- Research data management (RDM)20
- Synthetic genomics20
- Viral genomics20
- Whole genomes20
- Cloud computing18
- Computer science18
- HPC18
- High performance computing18
- High-performance computing18
- MicroRNA sequencing10
- RNA sequencing10
- RNA-Seq10
- RNA-Seq analysis10
- Small RNA sequencing10
- Small RNA-Seq10
- Small-Seq10
- Transcriptome profiling10
- WTSS10
- Whole transcriptome shotgun sequencing10
- miRNA-seq10
- Pipelines8
- Software integration8
- Tool integration8
- Tool interoperability8
- Workflows8
- Active learning6
- DNA variation6
- Ensembl learning6
- Genetic variation6
- Genomic variation6
- Kernel methods6
- Knowledge representation6
- Machine learning6
- Mutation6
- Neural networks6
- Polymorphism6
- Recommender system6
- Reinforcement learning6
- Somatic mutations6
- Supervised learning6
- Unsupervised learning6
- Comparative transcriptomics5
- Data archival5
- Data archiving5
- Data curation5
- Data curation and archival5
- Data preservation5
- Database curation5
- Research data archiving5
- Transcriptome5
- Transcriptomics5
- Bayesian methods4
- Biomathematics4
- Biostatistics4
- Chromosome walking4
- Clone verification4
- Codon usage4
- Computational biology4
- DNA chips4
- DNA microarrays4
- DNA-Seq4
- DNase-Seq4
- Data rendering4
- Data visualisation4
- Descriptive statistics4
- Expression4
- Gaussian processes4
- Gene expression4
- Gene expression profiling4
- Gene transcription4
- Gene translation4
- High throughput sequencing4
- High-throughput sequencing4
- Inferential statistics4
- Markov processes4
- Mathematical biology4
- Multivariate statistics4
- NGS4
- NGS data analysis4
- Next gen sequencing4
- Next generation sequencing4
- Panels4
- Primer walking4
- Probabilistic graphical model4
- Probability4
- Sanger sequencing4
- Sequencing4
- Statistics4
- Statistics and probability4
- Targeted next-generation sequencing panels4
- Theoretical biology4
- Transcription4
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Operation
- Data handling9
- File handling9
- File processing9
- Processing9
- Report handling9
- Utility operation9
- Data visualisation5
- Molecular visualisation5
- Plotting5
- Rendering5
- Visualisation5
- Allele calling4
- Exome variant detection4
- Genome variant detection4
- Germ line variant calling4
- Mutation detection4
- Somatic variant calling4
- Variant calling4
- Variant mapping4
- de novo mutation detection4
- Data analysis3
- Data brokering3
- Data deposition3
- Data deposition brokering3
- Data formatting3
- Data reformatting3
- Data submission3
- Database deposition3
- Database submission3
- File format conversion3
- File formatting3
- File reformatting3
- Format conversion3
- Consensus-based sequence alignment2
- Constrained sequence alignment2
- Data filtering2
- Docking simulation2
- Expression analysis2
- Expression data analysis2
- File format validation2
- Format validation2
- Gene expression analysis2
- Gene expression data analysis2
- Gene expression regulation analysis2
- Genetic variation analysis2
- Genetic variation annotation2
- Macromolecular docking2
- Metagenomic inference2
- Microarray data analysis2
- Molecular docking2
- Molecular surface analysis2
- Multiple sequence alignment (constrained)2
- Oligonucleotide alignment2
- Oligonucleotide alignment construction2
- Oligonucleotide alignment generation2
- Oligonucleotide mapping2
- Peak calling2
- Peak-pair calling2
- Protein binding peak detection2
- Protein expression analysis2
- Read alignment2
- Read mapping2
- Read pre-processing2
- Sequence alignment2
- Sequence alignment (constrained)2
- Sequence alignment construction2
- Sequence alignment generation2
- Sequence filtering2
- Sequence read pre-processing2
- Sequence variation analysis2
- Short oligonucleotide alignment2
- Short read alignment2
- Short read mapping2
- Short sequence read mapping2
- Structure database search2
- Transcript variant analysis2
- Variant analysis2
- rRNA filtering2
- Biological pathway analysis1
- Biological pathway modelling1
- Biological pathway prediction1
- Breakend assembly1
- Classification1
- Clustering1
- Design1
- Expectation maximisation1
- Functional clustering1
- Functional genome annotation1
- Functional pathway analysis1
- Functional sequence clustering1
- Genome annotation1
- Genome assembly1
- Genomic assembly1
- Gibbs sampling1
- Hypothesis testing1
- Metagenome annotation1
- Molecular dynamics1
- Molecular dynamics simulation1
- Omnibus test1
- Pathway analysis1
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Tool
- AutoDock Vina5
- SPCI5
- AlphaFold 22
- BWA2
- Bowtie 22
- DESeq22
- Data Stewardship Wizard2
- European Nucleotide Archive (ENA)2
- FastQC2
- Ontology Lookup Service2
- PDBe2
- PyMOL2
- R2
- RStudio2
- edgeR2
- ChEMBL1
- Gromacs1
- HADDOCK web portal1
- Open PHACTS API1
- PDBe-KB1
- Workflow4Metabolomics1
- WorkflowHub1
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Venue
- European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Wellcome Genome Campus12
- European Bioinformatics Institute (EMBL-EBI) - Training Room 2, Wellcome Genome Campus8
- European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus6
- University of Ljubljana, Faculty of Medicine6
- Australia2
- Institute of Organic Chemistry and Biochemistry AS CR, 2, Flemingovo náměstí2
- Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande2
- Leuven2
- Palacky University Olomouc (UPOL) Faculty of Science tř. 17. listopadu 12 rooms 3.002 (tutorials/challenge), 3.003 (lectures) Olomouc 77900 Czech Republic2
- University of Milano Bicocca2
- University of Minho - Campus of Gualtar, Rua da Universidade2
- Uppsala University, SciLifeLab, BMC, Husargatan 3, Uppsala2
- Via Pietro Castellino, 1112
- 17. listopadu 1192/12, 12 17. listopadu1
- 17. listopadu, 17. listopadu1
- 180 chemin de Tournefeuille1
- Adriatico Guest House - Denardo Lecture Hall International Centre for Theoretical Physics Trieste, Italy1
- Alvisse Parc Hotel****, 120, Route d'Echternach1
- Auditorium 2005 (the Linux classroom), Narva mnt 18 (UT Delta Centre)1
- CCMAR - Center of Marine Sciences1
- Campus di Fisciano, Università degli Studi di Salerno, Via Giovanni Paolo II, n. 1321
- Campus di Fisciano, Università di Salerno1
- Cancer Research UK Cambridge Institute, Li Ka Shing Centre1
- Centro Nacional de Investigaciones Oncológicas, 3, Calle de Melchor Fernández Almagro1
- Champalimaud Foundation, Avenida Brasília1
- Cirad, 389, Avenue Agropolis1
- Computational and Data Driven Science1
- Dipartimento di Scienze Biochimiche - Alessandro Rossi Fanelli, 332, Viale Regina Elena1
- Earlham Institute (EI), Colney Lane1
- Escuela Técnica Superior de Ingeniería Informática, 35, Bulevar Louis Pasteur1
- European Molecular Biology Laboratory1
- European Molecular Biology Laboratory, 1, Meyerhofstraße1
- Faculty of Law, University of Ljubljana, Poljanski nasip 21
- Feinberg Room B1
- Fondazione Edmund Mach, Palazzo della Ricerca e della Conoscenza, Via E. Mach 1, San Michele all'Adige1
- Gaustadalléen 23, 23, Gaustadalléen1
- Haakon Sheteligs plass 7, Haakon Sheteligs plass1
- Haakon Sheteligs plass 7, 7 Haakon Sheteligs plass https://link.mazemap.com/LXrHvr7p1
- Hilton Atlanta Airport, 1031, Virginia Avenue1
- Hotel Berlin Berlin, 17, Lützowplatz1
- Humboldt Universität zu Berlin - Berlin Adlershof Erwin Schrödinger-Zentrum Adlershof Rudower Chaussee 26 12489 Berlin [Site Plan](https://www.bauten.hu-berlin.de/de/esz/lage/esz_2017.pdf)1
- INRA, URGI, Bat 18 Route de SaintCyr RD101
- ITQB NOVA, Avenida da República1
- Im Alten Rundling 13, 13 Im Alten Rundling1
- Instituto Gulbenkian de Ciência1
- Instituto de Medicina Molecular (IMM), Avenida Professor Egas Moniz1
- Institutt for pedagogikk og lærerutdanning (Faculty of Humanities), Teorifagbygget-Hus 11
- Luxembourg Learning Centre University of Luxembourg1
- Luxembourg Learning Centre, University of Luxembourg1
- MSTC, Sherrington Building, University of Liverpool1
- Maastricht University1
- Melbourne1
- On Line - ZOOM platform1
- On line event1
- Online1
- Online via Zoom1
- Onsite on three different locations across Sweden where the Swedish national Research Infrastructures, MaxIV, SciLifeLab and ESS are coming together to deliver a course on structural biology. The course will be held in Sweden, on site, between Aug 22 and Sept 2nd 2022. *Lund, 22 to 25 Aug *Gothenburg, 26 Aug *Stockholm, 29 Aug to 2 Sep1
- Palacky University Olomouc (UPOL) Faculty of Science tř. 17. listopadu 12, Olomouc 77900, Czech Republic rooms 3.002 (tutorials/challenge), 3.003 (lectures)1
- Pathologie Universitätsspital Basel, 40, Schönbeinstrasse1
- Rikli Balance Hotel, Cankarjeva cesta 4, SI-4260 Bled, Slovenia1
- SciLifeLab - Air&Fire, Tomtebodavägen 23 A1
- Small Lecture Theatre, MSI-WTB, School of Life Sciences, University of Dundee,1
- Station Biologique De Roscoff1
- Station Biologique De Roscoff, Place Georges Teissier1
- Stavros Niarchos Foundation Cultural Center, 364, Leoforos Andrea Siggrou1
- Technická 3, 3, Technická1
- Thermo Fisher Scientific 129, Frankfurter Straße Darmstadt D-642931
- UNSW Sydney1
- University Campus Bohunice, Masaryk University, Brno, Czech Republic1
- University Place, University of Manchester1
- University of Cambridge, Trinity Ln1
- University of Dundee, Nethergate1
- University of Liverpool1
- University of Ljubljana, Faculty of Medicine, Institute for Biostatistics and Medical Informatics, Vrazov Trg 2, SI-1000, Ljubljana, Slovenia1
- University of Ljubljana, Faculty of Medicine, Vrazov trg 2, SI-1000 Ljubljana, Slovenia1
- University of Milano-Bicocca, Building U7, Lab 7151
- University of Paris-Sud, 15, Rue Georges Clemenceau1
- University of Tromsø1
- Università degli Studi di Padova - Campus di Biologia e Biomedicina "Fiore di Botta", 8, Via del Pescarotto1
- Università degli Studi di Padova - Casa della Gioventù, Via Rio Bianco,121
- V Sadech 1/1, 1, V Sadech1
- Via Bicocca degli Arcimboldi, 8, Lab. 715, U7 Building1
- Via Giano della Bella, 341
- Via Giovanni Amendola, 1221
- Via Nizza, 52 Molecular Biotechonology Center, University of Turin1
- Via Pietro Castellino, 111, 111, Via Pietro Castellino1
- Via dei Tizii, 6B1
- Vila Lanna V Sadech 1 160 00 Praha 6 – Bubeneč1
- Virtual Event1
- Wellcome Genome Campus1
- Wyndham Garden Berlin Mitte, 116A Osloer Straße1
- https://www.uib.no/en/digitallab1
- online1
- p.le Aldo Moro 71
- “ATHENA” Research Center (ATHENA RC) Artemidos 6 & Epidavrou 15125, Marousi, GR1
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City
- Cambridge27
- Ljubljana9
- Online7
- Prague5
- Oeiras4
- Roma4
- Bergen3
- Berlin3
- Napoli3
- Olomouc3
- Athens2
- Bologna2
- Braga2
- Dundee2
- Fisciano2
- Leuven2
- Liverpool2
- Melbourne2
- Milano2
- Norwich2
- Olomouc 92
- Roscoff2
- Tromsø2
- Uppsala2
- Atlanta1
- Bari1
- Basel1
- Belval1
- Bled1
- Bradford1
- Brno1
- Clenze1
- Darmstadt1
- Esch-sur-Alzette1
- Faro1
- Grignano1
- Heidelberg1
- Hinxton1
- Lisboa1
- Lisbon1
- Lund, Gothenburg, Stockholm1
- Luxembourg1
- Maastricht1
- Madrid1
- Manchester1
- Milan1
- Montferrier-sur-Lez (Montpellier area)1
- Málaga1
- Orsay1
- Oslo1
- Padova1
- Paris1
- Rehovot1
- San Michele all'Adige1
- Stockholm1
- Sydney1
- Tartu1
- Torino1
- Toulouse1
- Versailles1
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Sponsor
- ELIXIR CZ6
- Centre for Digital Life Norway4
- ELIXIR Italy3
- IFB3
- Palacký University Olomouc3
- RDA-Portugal3
- Aviesan ITMO GGB2
- ELIXIR2
- ELIXIR EXCELERATE2
- ELIXIR Training Platform2
- ELIXIR-CONVERGE2
- INSERM2
- MetaboHUB2
- Palacky University Olomouc2
- RFMF2
- CCMAR1
- UALG1
- Aurora1
- Aurora Alliance1
- Australian BioCommons1
- Center for Experimental and Clinical Imaging Technologies Zurich (EXCITE Zurich)1
- Data & Software Carpentry1
- Digital Life Norway1
- ELIXIR 1
- ELIXIR Converge1
- ELIXIR Norway1
- ELIXIR-FR/IFB1
- EMBO1
- EMBO Courses and Workshops1
- EOSC-Life1
- EXCELERATE1
- Elixir Belgium1
- Elixir Italy1
- European Union1
- Genetics Society of AustralAsia1
- Genotoul1
- HPC Carpentry1
- INB/ELIXIR-ES1
- INRA1
- INTERREG V-A Italy-Slovenia 2014-2020 project TRAIN1
- IOCB Prague1
- ISCIII1
- Joachim Herz Foundation1
- NBIS - National Bioinformatics Infrastructure Sweden1
- NORBIS1
- National Research Council of Italy1
- Seqera1
- The Carpentries1
- This InfraLife integrative structural biology course is organized with funding support from the Swedish research council, Lif, Excillum, NBIS, Xenocs, SwedNMR, Bruker and CryoNET.1
- UKRI – UK Research and Innovation1
- University of Bergen1
- University of Dundee1
- University of Dundee PhD Program1
- de.NBI1
- nf-core1
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Target audience
- PhD students43
- Researchers39
- Life Science Researchers24
- Master students19
- life scientists16
- Biologists9
- Technicians7
- bioinformaticians7
- PhD Students6
- PhD candidates6
- Undergraduate students5
- Bioinformaticians4
- Post docs4
- Trainers4
- database managers4
- Anyone who wants to become a teacher / trainer or a better one3
- Clinicians3
- Core Facility Managers3
- Post-docs3
- Postdoctoral Researchers3
- Professors3
- Training Designers3
- Training instructors3
- Wet-lab Researchers3
- data stewards3
- healthcare professionals3
- medical specialists3
- post-docs3
- postdoctoral researchers3
- registry curators3
- teachers3
- rare disease patients representatives2
- Academics2
- All postgraduates2
- Bench biologists2
- Bioinformatician2
- Bioinformaticians and wet-lab biologists2
- Biologists with little or no prior computational experience2
- Biologists, Genomicists, Computer Scientists2
- Cette formation est destinée aux biologistes (ingénieurs, doctorants, chercheurs, enseignants-chercheurs, praticiens…) confrontés à l’analyse de données NGS, et qui ne disposent pas des compétences bioinformatiques suffisantes.2
- Clinical Scientists2
- Data Managers2
- Data stewards2
- Early Career Researcher2
- Graduate Students2
- Industry2
- Post Docs2
- Principal Investigators2
- Researcher in life sciences2
- Scientists2
- beginner bioinformaticians2
- data managers2
- teachers / trainers2
- PhD students1
- Researchers in Life Sciences1
- Academia1
- Any students, postdocs or RAs with an interest in HPC1
- Associate Professors1
- Beginners in statistics1
- Bioinformatician, Bioanalysts1
- Bioinformaticians and Biologists who want to learn how to manipulate, process data, and make plots using R1
- Bioinformaticians and wet-lab biologists who can program1
- Bioinformatics beginners 1
- Biomedical researchers1
- Biotechnology Companies1
- Business Entrepreneurs1
- Bussiness Professionals1
- Chemists1
- Computational biologists1
- DevOps in any field1
- Developers1
- ECR1
- Educators1
- Evolutionary Biologists1
- Experimental Researchers1
- Experts1
- Graduate students1
- HPC users1
- Healthcare professionals 1
- Life Science Researcher1
- Mainly graduate students and Junior post-docs, of either experimental or computational background, with basic training in life sciences, or (bio)chemistry, or physics, or mathematics, or engineering1
- Masters students1
- Members of ELIXIR-UK consortium member institutions working on ELIXIR-related projects 1
- Participants are expected to be familiar with Linux and scripting1
- People from any area with little or no prior computational experience1
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members1
- PhD Students or young researchers in molecular biology and/or genetics with little or no background in bioinformatics. 1
- PhD and graduate students, young researchers and PIs in the life science and computational biology field1
- PhD students and young researchers in the life science and computational biology field who are planning to use RNA-seq data and are looking for the best practices to analyze these types of data1
- Pharmaceutical Industry1
- Post-Docs1
- Post-Doctoral Fellows1
- PostDocs1
- Postgraduate students1
- Professionals involved in personalized molecular oncology, including laboratory managers, biologists, bioinformaticians, pathologists, geneticists, clinicians and pharmaceutical company employees.1
- Research scientists1
- Researchers with an interest in metabolomics and its applications1
- Support Staff1
- System administrators1
- Technologists1
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Language
- English5
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