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- European Bioinformatics Institute (EBI)27
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- FAIRDOM1
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- NORBIS, the Norwegian national research school in bioinformatics, biostatistics and systems biology1
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Keyword
- HDRUK27
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- molecular docking4
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- Bioconductor2
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- TtT, Train the Trainer, Educational psychology, cognitive science, teaching practices 2
- Variant detection2
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- assembly2
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- computer-science2
- drug discovery2
- genome annotation2
- machine learning2
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Scientific topic
- Bioinformatics29
- Data management22
- Metadata management22
- Exomes20
- Genome annotation20
- Genomes20
- Genomics20
- Personal genomics20
- Synthetic genomics20
- Viral genomics20
- Whole genomes20
- Cloud computing18
- Computer science18
- HPC18
- High performance computing18
- High-performance computing18
- MicroRNA sequencing10
- RNA sequencing10
- RNA-Seq10
- RNA-Seq analysis10
- Small RNA sequencing10
- Small RNA-Seq10
- Small-Seq10
- Transcriptome profiling10
- WTSS10
- Whole transcriptome shotgun sequencing10
- miRNA-seq10
- Pipelines8
- Research data management (RDM)8
- Software integration8
- Tool integration8
- Tool interoperability8
- Workflows8
- Data curation7
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- Active learning6
- DNA variation6
- Ensembl learning6
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- Kernel methods6
- Knowledge representation6
- Machine learning6
- Mutation6
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- Recommender system6
- Reinforcement learning6
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- Supervised learning6
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- Bayesian methods5
- Biostatistics5
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- Probabilistic graphical model5
- Probability5
- Statistics5
- Statistics and probability5
- Transcriptome5
- Transcriptomics5
- Biomathematics4
- Chromosome walking4
- Clone verification4
- Codon usage4
- Computational biology4
- DNA chips4
- DNA microarrays4
- DNA-Seq4
- DNase-Seq4
- Data provenance4
- Data rendering4
- Data submission, annotation, and curation4
- Data visualisation4
- Expression4
- FAIR data4
- Findable, accessible, interoperable, reusable data4
- Gene expression4
- Gene expression profiling4
- Gene transcription4
- Gene translation4
- High throughput sequencing4
- High-throughput sequencing4
- Mathematical biology4
- NGS4
- NGS data analysis4
- Next gen sequencing4
- Next generation sequencing4
- Panels4
- Primer walking4
- Sanger sequencing4
- Sequencing4
- Targeted next-generation sequencing panels4
- Theoretical biology4
- Transcription4
- Comparative modelling3
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Operation
- Data handling10
- File handling10
- File processing10
- Processing10
- Report handling10
- Utility operation10
- Data visualisation5
- Molecular visualisation5
- Plotting5
- Rendering5
- Visualisation5
- Allele calling4
- Data deposition4
- Data submission4
- Database deposition4
- Database submission4
- Exome variant detection4
- Genome variant detection4
- Germ line variant calling4
- Mutation detection4
- Somatic variant calling4
- Variant calling4
- Variant mapping4
- de novo mutation detection4
- Analysis3
- Data brokering3
- Data deposition brokering3
- Data formatting3
- Data reformatting3
- File format conversion3
- File formatting3
- File reformatting3
- Format conversion3
- Consensus-based sequence alignment2
- Constrained sequence alignment2
- Data filtering2
- Docking simulation2
- Expression analysis2
- Expression data analysis2
- File format validation2
- Format validation2
- Gene expression analysis2
- Gene expression data analysis2
- Gene expression regulation analysis2
- Genetic variation analysis2
- Genetic variation annotation2
- Macromolecular docking2
- Metagenomic inference2
- Microarray data analysis2
- Molecular docking2
- Molecular surface analysis2
- Multiple sequence alignment (constrained)2
- Oligonucleotide alignment2
- Oligonucleotide alignment construction2
- Oligonucleotide alignment generation2
- Oligonucleotide mapping2
- Peak calling2
- Peak-pair calling2
- Protein binding peak detection2
- Protein expression analysis2
- Read alignment2
- Read mapping2
- Read pre-processing2
- Sequence alignment2
- Sequence alignment (constrained)2
- Sequence alignment construction2
- Sequence alignment generation2
- Sequence filtering2
- Sequence read pre-processing2
- Sequence variation analysis2
- Short oligonucleotide alignment2
- Short read alignment2
- Short read mapping2
- Short sequence read mapping2
- Structure database search2
- Transcript variant analysis2
- Variant analysis2
- rRNA filtering2
- Biological pathway analysis1
- Biological pathway modelling1
- Biological pathway prediction1
- Breakend assembly1
- Classification1
- Clustering1
- Deposition1
- Design1
- Empirical Bayes1
- Expectation maximisation1
- Functional clustering1
- Functional genome annotation1
- Functional pathway analysis1
- Functional sequence clustering1
- Genome annotation1
- Genome assembly1
- Genomic assembly1
- Gibbs sampling1
- Hypothesis testing1
- Metagenome annotation1
- Molecular dynamics1
- Molecular dynamics simulation1
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Tool
- AutoDock Vina5
- SPCI5
- AlphaFold 22
- BWA2
- Bowtie 22
- DESeq22
- Data Stewardship Wizard2
- European Nucleotide Archive (ENA)2
- FastQC2
- Ontology Lookup Service2
- PDBe2
- PyMOL2
- R2
- RStudio2
- edgeR2
- ChEMBL1
- Gromacs1
- HADDOCK web portal1
- Open PHACTS API1
- PDBe-KB1
- Workflow4Metabolomics1
- WorkflowHub1
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Venue
- European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Wellcome Genome Campus12
- European Bioinformatics Institute (EMBL-EBI) - Training Room 2, Wellcome Genome Campus8
- European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus6
- University of Ljubljana, Faculty of Medicine6
- Instituto Gulbenkian de Ciência3
- Australia2
- Institute of Organic Chemistry and Biochemistry AS CR, 2, Flemingovo náměstí2
- Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande2
- Leuven2
- Palacky University Olomouc (UPOL) Faculty of Science tř. 17. listopadu 12 rooms 3.002 (tutorials/challenge), 3.003 (lectures) Olomouc 77900 Czech Republic2
- University of Milano Bicocca2
- University of Minho - Campus of Gualtar, Rua da Universidade2
- Uppsala University, SciLifeLab, BMC, Husargatan 3, Uppsala2
- Via Pietro Castellino, 1112
- 17. listopadu 1192/12, 12 17. listopadu1
- 17. listopadu, 17. listopadu1
- 180 chemin de Tournefeuille1
- Adriatico Guest House - Denardo Lecture Hall International Centre for Theoretical Physics Trieste, Italy1
- Alvisse Parc Hotel****, 120, Route d'Echternach1
- Auditorium 2005 (the Linux classroom), Narva mnt 18 (UT Delta Centre)1
- CCMAR - Center of Marine Sciences1
- Campus di Fisciano, Università degli Studi di Salerno, Via Giovanni Paolo II, n. 1321
- Campus di Fisciano, Università di Salerno1
- Cancer Research UK Cambridge Institute, Li Ka Shing Centre1
- Centro Nacional de Investigaciones Oncológicas, 3, Calle de Melchor Fernández Almagro1
- Champalimaud Foundation, Avenida Brasília1
- Cirad, 389, Avenue Agropolis1
- Computational and Data Driven Science1
- Dipartimento di Scienze Biochimiche - Alessandro Rossi Fanelli, 332, Viale Regina Elena1
- Earlham Institute (EI), Colney Lane1
- Escuela Técnica Superior de Ingeniería Informática, 35, Bulevar Louis Pasteur1
- European Molecular Biology Laboratory1
- European Molecular Biology Laboratory, 1, Meyerhofstraße1
- Faculty of Law, University of Ljubljana, Poljanski nasip 21
- Feinberg Room B1
- Fondazione Edmund Mach, Palazzo della Ricerca e della Conoscenza, Via E. Mach 1, San Michele all'Adige1
- Forschungszentrum Jülich, Central Library1
- Gaustadalléen 23, 23, Gaustadalléen1
- Haakon Sheteligs plass 7, Haakon Sheteligs plass1
- Haakon Sheteligs plass 7, 7 Haakon Sheteligs plass https://link.mazemap.com/LXrHvr7p1
- Hilton Atlanta Airport, 1031, Virginia Avenue1
- Hotel Berlin Berlin, 17, Lützowplatz1
- Humboldt Universität zu Berlin - Berlin Adlershof Erwin Schrödinger-Zentrum Adlershof Rudower Chaussee 26 12489 Berlin [Site Plan](https://www.bauten.hu-berlin.de/de/esz/lage/esz_2017.pdf)1
- INRA, URGI, Bat 18 Route de SaintCyr RD101
- ITQB NOVA, Avenida da República1
- Im Alten Rundling 13, 13 Im Alten Rundling1
- Instituto Gulbenkian de Ciência, Oeiras, PT1
- Instituto de Medicina Molecular (IMM), Avenida Professor Egas Moniz1
- Institutt for pedagogikk og lærerutdanning (Faculty of Humanities), Teorifagbygget-Hus 11
- Lovensdijkstraat, Lovensdijkstraat1
- Luxembourg Learning Centre University of Luxembourg1
- Luxembourg Learning Centre, University of Luxembourg1
- MSTC, Sherrington Building, University of Liverpool1
- Maastricht University1
- Melbourne1
- Norway1
- On Line - ZOOM platform1
- On line event1
- Online1
- Online and F2F (See details in training documentation)1
- Online via Zoom1
- Onsite on three different locations across Sweden where the Swedish national Research Infrastructures, MaxIV, SciLifeLab and ESS are coming together to deliver a course on structural biology. The course will be held in Sweden, on site, between Aug 22 and Sept 2nd 2022. *Lund, 22 to 25 Aug *Gothenburg, 26 Aug *Stockholm, 29 Aug to 2 Sep1
- Palacky University Olomouc (UPOL) Faculty of Science tř. 17. listopadu 12, Olomouc 77900, Czech Republic rooms 3.002 (tutorials/challenge), 3.003 (lectures)1
- Pathologie Universitätsspital Basel, 40, Schönbeinstrasse1
- R. Q.ta Grande 6, 6, Rua Quinta Grande1
- Rikli Balance Hotel, Cankarjeva cesta 4, SI-4260 Bled, Slovenia1
- Rua da Quinta Grande, 61
- SciLifeLab - Air&Fire, Tomtebodavägen 23 A1
- Small Lecture Theatre, MSI-WTB, School of Life Sciences, University of Dundee,1
- Station Biologique De Roscoff1
- Station Biologique De Roscoff, Place Georges Teissier1
- Stavros Niarchos Foundation Cultural Center, 364, Leoforos Andrea Siggrou1
- Technická 3, 3, Technická1
- Thermo Fisher Scientific 129, Frankfurter Straße Darmstadt D-642931
- UNSW Sydney1
- University Place, University of Manchester1
- University of Cambridge, Trinity Ln1
- University of Dundee, Nethergate1
- University of Liverpool1
- University of Ljubljana, Faculty of Medicine, Institute for Biostatistics and Medical Informatics, Vrazov Trg 2, SI-1000, Ljubljana, Slovenia1
- University of Ljubljana, Faculty of Medicine, Vrazov trg 2, SI-1000 Ljubljana, Slovenia1
- University of Milano-Bicocca, Building U7, Lab 7151
- University of Paris-Sud, 15, Rue Georges Clemenceau1
- University of Tromsø1
- Università degli Studi di Padova - Campus di Biologia e Biomedicina "Fiore di Botta", 8, Via del Pescarotto1
- Università degli Studi di Padova - Casa della Gioventù, Via Rio Bianco,121
- V Sadech 1/1, 1, V Sadech1
- Via Bicocca degli Arcimboldi, 8, Lab. 715, U7 Building1
- Via Giano della Bella, 341
- Via Giovanni Amendola, 1221
- Via Nizza, 52 Molecular Biotechonology Center, University of Turin1
- Via Pietro Castellino, 111, 111, Via Pietro Castellino1
- Via dei Tizii, 6B1
- Vila Lanna V Sadech 1 160 00 Praha 6 – Bubeneč1
- Virtual Event1
- Wellcome Genome Campus1
- Wyndham Garden Berlin Mitte, 116A Osloer Straße1
- https://www.uib.no/en/digitallab1
- online1
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City
- Cambridge27
- Oeiras10
- Ljubljana9
- Online7
- Prague5
- Roma4
- Bergen3
- Berlin3
- Napoli3
- Olomouc3
- Athens2
- Bologna2
- Braga2
- Dundee2
- Fisciano2
- Leuven2
- Liverpool2
- Melbourne2
- Milano2
- Norwich2
- Olomouc 92
- Roscoff2
- Tromsø2
- Uppsala2
- Atlanta1
- Bari1
- Basel1
- Belval1
- Bled1
- Bradford1
- Breda1
- Clenze1
- Darmstadt1
- Esch-sur-Alzette1
- Faro1
- Grignano1
- Heidelberg1
- Hinxton1
- Jülich1
- Lisboa1
- Lisbon1
- Lund, Gothenburg, Stockholm1
- Luxembourg1
- Maastricht1
- Madrid1
- Manchester1
- Milan1
- Montferrier-sur-Lez (Montpellier area)1
- Málaga1
- Orsay1
- Oslo1
- Padova1
- Paris1
- Rehovot1
- San Michele all'Adige1
- Stockholm1
- Sydney1
- Tartu1
- Torino1
- Toulouse1
- Versailles1
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Organizer
- Australian BioCommons27
- Pedro Fernandes6
- Karel Berka, Pavel Polishchuk5
- BioData.pt4
- ELIXIR Norway4
- Earlham Institute4
- ELIXIR Slovenia3
- ELIXIR Slovenia, ELIXIR Sweden, NBIS3
- European Joint Programme on Rare Diseases (EJP-RD), Istituto Superiore di Sanità of Italy3
- NBIS3
- BioExcel2
- Centre for Digital Life Norway, ELIXIR-Norway, NRIS and the University of Bergen Library Digital Lab2
- ELIXIR CZ, IOCB Prague2
- ELIXIR Slovenia, University of Ljubljana, Faculty of Medicine2
- FAIRDOM (https://fair-dom.org)2
- Software Carpentry2
- ABiMS (http://abims.sb-roscoff.fr/), AVIESAN (http://www.aviesan.fr/en), BiGEst (http://bigest.unistra.fr/), IFB (https://www.france-bioinformatique.fr/), IFB Core (https://www.france-bioinformatique.fr/), MIGALE (https://migale.inrae.fr)1
- Allegra Via (ELIXIR-IIB Training Coordinator, IBPM-CNR, IT) Loredana Le Pera (ELIXIR-IIB Training Team, IBIOM-CNR, IT) Tiziana Castrignanò (SCAI Department, CINECA, Roma, IT) 1
- Allegra Via, Patricia Palagi, Loredana Le Pera1
- Allegra Via, Pedro Fernandes, Anna Marabotti, Roberto Tagliaferri, Loredana Le Pera1
- Allied Academies1
- Anna Marabotti (University of Salerno and ELIXIR-IIB Training Team, Italy), Roberto Tagliaferri (University of Salerno, Italy), Alessandro Weisz (University of Salerno, Italy), Loredana Le Pera (ELIXIR-IIB Training Team and IIT, Italy), Allegra Via (ELIXIR-IIB Training Coordinator, CNR-IBPM, Italy) 1
- Arctic University of Norway, ELIXIR Norway, ELIXIR Slovenia1
- Avans Hogeschool1
- Aviesan ITMO GGB, Inserm, IFB1
- BITS2018/ELIXIR-IIB1
- Barcelona Supercomputing Center (BSC), EMBL-European Bioinformatics Institute (EMBL-EBI), Izmir Biomedicine and Genome Center (IBG), INCLIVA Health Research Institute, Spanish National Bioinformatics Institute (INB/ELIXIR-ES)1
- BioData.pt | ELIXIR Portugal1
- BioData.pt, ITQB NOVA1
- BioData.pt, iMM - Instituto de Medicina Molecular João Lobo Antunes1
- Biocev1
- Biodata.pt; Congento; RNEM - Portuguese Mass Spectrometry Network1
- Bologna Biocomputing Group1
- CHARME, ELIXIR Slovenia, NIB1
- Centre for Genomic Pathogen Surveillance (University of Oxford) and Wellcome Connecting Science1
- Chiara Batini (University of Leicester, UK), Vincenza Colonna (CNR, Napoli, IT) and Allegra Via (CNR-IBPM, IT)1
- Computational Biology Facility1
- Computational Biology Facility, University of Liverpool: https://www.liverpool.ac.uk/computational-biology-facility/1
- Cymon J. Cox, CCMAR1
- Daniele Parisi, Cedric Lood, Nikolina Šoštarić, Vera Van Noort1
- Dr Jim Procter and Dr Dan Rigden1
- Dr. Dena Leshkowitz1
- ELIXIR Estonia1
- ELIXIR Germany (de.NBI), Deutsche Initiative für Netzwerkinformation (DINI), ELIXIR UK, ELIXIR Norway1
- ELIXIR Germany and Beacon community1
- ELIXIR Italy1
- ELIXIR Norway, Digital Life Norway1
- ELIXIR Norway, University Library of Bergen, NRIS, Centre for Digital Life Norway1
- ELIXIR PT, Instituto Gulbenkian1
- ELIXIR SI, University of Ljubljana, Faculty of Medicine1
- ELIXIR Slovenia and Faculty of Medicine, University of Ljubljana 1
- ELIXIR-BE, ELIXIR-FR, ELIXIR-NO, ELIXIR-PT, ELIXIR-SE, ELIXIR-SI1
- ELIXIR-CZ, UCT Prague1
- ELIXIR-GR (FORTH/ICE-HT) in collaboration with ELIXIR-ES (UB) 1
- ELIXIR-IT (L. Le Pera, V. Colonna, A. Via), Carpentries Italia1
- ELIXIR-NO, ELIXIR-SE (NBIS), ELIXIR-SI, ELIXIR-FR (INRAE)1
- ELIXIR-UK1
- EMBL/ELIXIR-DE1
- EMBO1
- ETHZ, EPFL1
- EXCELERATE ELIXIR-Carpentries 1
- Elixir-Luxembourg1
- Emma Lazzeri, Loredana Le Pera, Ivan Miçetic, Gina Pavone, Allegra Via1
- Escuela Técnica Superior de Ingeniería Informática1
- Gabriella Rustici1
- German Human Genome Phenome Archive1
- Gianluca Della Vedova (Department of Computer Science, University of Milano-Bicocca, IT), Loredana Le Pera (ELIXIR-IIB Training Coordinator Deputy, IBIOM-CNR, IT), Allegra Via (ELIXIR-IIB Training Coordinator, IBPM-CNR, IT)1
- Hellenic Society for Computational Biology1
- INB/ELIXIR-ES and Barcelona Supercomputing Center (BSC)1
- INB/ELIXIR-ES and CNIO1
- INRA, URGI platform1
- IOCB Prague, University of Ljubljana, Faculty of Medicine, ELIXIR-FI1
- Infralife1
- Instituto Gulbenkian, ELIXIR Portugal, GOBLET1
- International Bologna Master in Bioinformatics; Interdepartmental Centre Alma Climate; Dep. of Pharmacy and Biotechnology - Univ. of Bologna; SIB; Accademia delle Scienze dell'Istituto di Bologna1
- Ivan Mičetić, Silvio Tosatto, Allegra Via, Loredana Le Pera1
- James Procter1
- Jiří Vondrášek, Anna Strachotová1
- Jozef Stefan Institute, Ljubljana, Slovenia1
- Leibniz University Hannover1
- Loredana Le Pera IBIOM/IBPM-CNR, Allegra Via IBPM-CNR1
- L’Institut Français de Bioinformatique (IFB), ELIXIR-FR1
- Maastricht University1
- Master's in Bioinformatics - University of Bologna1
- Monash Bioinformatics Platform1
- N8CIR1
- NBIS, SciLifeLab1
- NBIS, SciLifeLab Data Centre1
- NORBIS, the Norwegian national research school in bioinformatics, biostatistics and systems biology1
- Olivier Sand1
- Open Life Science1
- PRACE1
- Pedro L Fernandes1
- Roland Krause1
- SIB Swiss Institute of Bioinformatics1
- Sergio Giannattasio - CNR–IBIOM, Duccio Cavalieri - Univ. of Florence, Clara Musicco - CNR–IBIOM, Francesca De Leo - CNR–IBIOM, Loredana Le Pera - ISS, Allegra Via - CNR-IBPM1
- Thermo Fisher Scientific1
- Universidade do Minho1
- University of Bologna - Biocomputing group1
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Sponsor
- ELIXIR CZ6
- Centre for Digital Life Norway4
- ELIXIR3
- ELIXIR Italy3
- IFB3
- Oeiras Valley3
- Palacký University Olomouc3
- RDA-Portugal3
- Aviesan ITMO GGB2
- ELIXIR EXCELERATE2
- ELIXIR Training Platform2
- ELIXIR-CONVERGE2
- INSERM2
- MetaboHUB2
- Palacky University Olomouc2
- RFMF2
- CCMAR1
- UALG1
- Aurora1
- Aurora Alliance1
- Australian BioCommons1
- COST1
- Center for Experimental and Clinical Imaging Technologies Zurich (EXCITE Zurich)1
- Data & Software Carpentry1
- Digital Life Norway1
- ELIXIR 1
- ELIXIR Converge1
- ELIXIR Norway1
- ELIXIR-FR/IFB1
- EMBO1
- EMBO Courses and Workshops1
- EOSC-Life1
- EXCELERATE1
- Elixir Belgium1
- Elixir Italy1
- European Union1
- Genetics Society of AustralAsia1
- Genotoul1
- HPC Carpentry1
- INB/ELIXIR-ES1
- INRA1
- INTERREG V-A Italy-Slovenia 2014-2020 project TRAIN1
- IOCB Prague1
- ISCIII1
- Joachim Herz Foundation1
- NBIS - National Bioinformatics Infrastructure Sweden1
- NORBIS1
- National Research Council of Italy1
- Oeiras Valley1
- Seqera1
- The Carpentries1
- This InfraLife integrative structural biology course is organized with funding support from the Swedish research council, Lif, Excillum, NBIS, Xenocs, SwedNMR, Bruker and CryoNET.1
- UKRI – UK Research and Innovation1
- University of Bergen1
- University of Dundee1
- University of Dundee PhD Program1
- de.NBI1
- nf-core1
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Target audience
- PhD students43
- Researchers41
- Life Science Researchers25
- Master students19
- life scientists16
- Biologists9
- Technicians8
- bioinformaticians8
- PhD Students7
- PhD candidates6
- Trainers5
- Bioinformaticians4
- Post docs4
- Professors4
- Training Designers4
- Training instructors4
- Undergraduate students4
- database managers4
- All postgraduates3
- Anyone who wants to become a teacher / trainer or a better one3
- Biologists, Genomicists, Computer Scientists3
- Clinicians3
- Core Facility Managers3
- Data Managers3
- Data stewards3
- Post-docs3
- Postdoctoral Researchers3
- Wet-lab Researchers3
- data stewards3
- healthcare professionals3
- medical specialists3
- post-docs3
- postdoctoral researchers3
- registry curators3
- teachers3
- rare disease patients representatives2
- Academics2
- Bench biologists2
- Bioinformatician2
- Bioinformaticians and wet-lab biologists2
- Biologists with little or no prior computational experience2
- Cette formation est destinée aux biologistes (ingénieurs, doctorants, chercheurs, enseignants-chercheurs, praticiens…) confrontés à l’analyse de données NGS, et qui ne disposent pas des compétences bioinformatiques suffisantes.2
- Clinical Scientists2
- Early Career Researcher2
- Graduate Students2
- Post Docs2
- Principal Investigators2
- Researcher in life sciences2
- Scientists2
- beginner bioinformaticians2
- data managers2
- post-doctoral researchers and principle investigators working in wet-lab biology. Participants who are looking for a basic introduction to the bioinformatics resources offered by the EMBL-EBI and want to know more about accessing biological data and tools.2
- teachers / trainers2
- trainers2
- PhD students1
- Researchers in Life Sciences1
- Any students, postdocs or RAs with an interest in HPC1
- Associate Professors1
- Beginners in statistics1
- Bioinformatician, Bioanalysts1
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