Learning objectives:

• Be able to read and interrogate a phylogeny encountered in the literature
• Calculate pairwise SNP distances between MTB samples
• Create a SNP alignment
• Familiarize yourself with the basics of Galaxy
• How can we predict drug resistance from those variants
• How do we annotate those variants
• How should we filter those variants
• Identify transmission clusters based on SNP distances
• Learn how histories work
• Learn how to create a workflow
• Learn how to extract and run a workflow
• Learn how to obtain data from external sources
• Learn how to run tools
• Learn how to share a history
• Learn how to share your work
• Learn how to upload a file
• Learn how to use a tool
• Learn how to view histories
• Learn how to view results
• Study the emergence and spread of drug resistance based on transmission analysis.
• Understand the basic concepts behind phylogenetic trees, as applied to Mycobacterium tuberculosis

Organizer: Daniela Brites (https://training.galaxyproject.org/training-material/hall-of-fame/dbrites/)

Event types:

• Workshops and courses

Scientific topics: Genomics, Microbiology, Sequence assembly, Genetic variation, Public health and epidemiology, Infectious disease, DNA polymorphism, Phylogeny