Content Providers
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VHP4Safety
Material from the Dutch VHP4Safety project.
4 training materialsVHP4Safety https://vhp4safety.nl/ https://tess.elixir-europe.org/content_providers/vhp4safety Material from the Dutch VHP4Safety project. /system/content_providers/images/000/000/688/original/6XmjhQ2C_400x400.jpg?1696237918 -
University of Leicester Bioinformatics and Biostatistics Analysis Support Hub (BBASH)
The ongoing development of next generation sequencing (NGS) technologies has meant that vast amounts of sequencing data is being produced, with researchers increasingly wanting the capability and knowledge to analyse their own data. Over the past 3 years BBASH has developed a number of 1, 2 and...
0 events (2 past events)University of Leicester Bioinformatics and Biostatistics Analysis Support Hub (BBASH) https://www2.le.ac.uk/colleges/medbiopsych/facilities-and-services/cbs/bbash https://tess.elixir-europe.org/content_providers/university-of-leicester-bioinformatics-and-biostatistics-analysis-support-hub-bbash The ongoing development of next generation sequencing (NGS) technologies has meant that vast amounts of sequencing data is being produced, with researchers increasingly wanting the capability and knowledge to analyse their own data. Over the past 3 years BBASH has developed a number of 1, 2 and 3 day hands-on, NGS analysis workshops designed specificially to meet the needs of laboratory based researchers with little or no experience of NGS data analysis and command line tools. The workshops are held at the University of Leicester's state of the art College Court Conference Centre and consist of introductory presentations followed by practical sessions where delegates will gain hands-on experience of analysing and interpreting real data. The BBASH trainers are University of Leicester bioinformaticians or researchers with many years experience in bioinformatics and bioinformatics training, having delivered many workshops across the UK and Europe. /system/content_providers/images/000/000/086/original/BBASHlogo.png?1509536575 -
Jalview
Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure.
Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has...
0 events (2 past events)Jalview http://www.jalview.org/ https://tess.elixir-europe.org/content_providers/jalview Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure. Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has editing and annotation functionality within a fully integrated, multiple window interface. The sequence alignment programs Clustal Omega, Muscle, MAFFT, ProbCons, T-COFFEE, ClustalW, MSA Prob and GLProb can be run directly from within Jalview. Jalview integrates protein secondary structure prediction (JPred), generate trees, assesses consensus and conservation across sequence families. Journal quality figures can be generated from the results. The Jalview Desktop will run on Mac, MS Windows, Linux and any other platform that supports Java. It has been developed in Geoff Barton's group (www.compbio.dundee.ac.uk) in the School of Life Sciences (www.lifesci.dundee.ac.uk) at the University of Dundee with funding from the BBSRC and the Wellcome Trust. /system/content_providers/images/000/000/091/original/logo-boxg.png?1524735946 -
FAIRDOM
Research Infrastructure supporting life scientists in managing their data and models FAIRly. Specifically designed for interdisciplinary research such as systems biology, systems medicine, and synthetic biology.
0 events (2 past events)FAIRDOM https://fair-dom.org/ https://861596.fd6au1zn.asia/content_providers/fairdom Research Infrastructure supporting life scientists in managing their data and models FAIRly. Specifically designed for interdisciplinary research such as systems biology, systems medicine, and synthetic biology. /system/content_providers/images/000/000/100/original/Screen_Shot_2018-09-06_at_15.54.17.png?1536245244 -
ELIXIR Hungary
The Hungarian ELIXIR Node will include twelve different Hungarian universities and research institutes. The participating institutes represent five major scientific focus:
- Human genomics
- Proteomics
- Agricultural genomics
- Veterinary sciences and Ecology.
The Node has not established a...
0 events (2 past events)ELIXIR Hungary http://elixir-hungary.org/ https://tess.elixir-europe.org/content_providers/elixir-hungary The Hungarian ELIXIR Node will include twelve different Hungarian universities and research institutes. The participating institutes represent five major scientific focus: * Human genomics * Proteomics * Agricultural genomics * Veterinary sciences and Ecology. The Node has not established a Service Delivery Plan yet, but it can be anticipated that: * Protein databases (e.g. IUPred, ANCHOR, UniTmp) * Biomarker assesment portals (e.g. G-2-O, Kaplan-Meier Plotter) * Data depositories (e.g. Hungarian Oncogenome Portal) and * Virtual research environments (e.g. Kooplex) will be part of it. Joining ELIXIR, Hungary has the opportunity to strengthen collaboration among its diverse and scattered bioinformatics community. With the coordination of the resources at national level, the aforementioned services and tools will be more visible to the international research community. This goes hand in hand with the development of up to date bioinformatics courses in the education and training field. /system/content_providers/images/000/000/107/original/elixir-hungary.png?1542963208 -
UCLouvain Bioinformatics Platform
The platform's goak is to collaborate throughput the scientific community at the UCLouvain and offer technical and methodological bioinformatics support, including, among others:
support the bioinformatics aspects of grant proposals and experimental designs
high throughput omics data analysis...1 training material0 events (2 past events)UCLouvain Bioinformatics Platform https://uclouvain.be/en/research/bioinfo https://tess.elixir-europe.org/content_providers/uclouvain-bioinformatics-platform The platform's goak is to collaborate throughput the scientific community at the UCLouvain and offer technical and methodological bioinformatics support, including, among others: support the bioinformatics aspects of grant proposals and experimental designs high throughput omics data analysis such as genomics, epigenetics and transcriptomics (RNASeq or microarrays) or mass spectrometry based proteomics and metabolomics help in utilisation of public databases (TCGA, Gtex, CCLE, ENCODE, ...) development of dedicated algorithms and software. The platform also organises workshops in data analysis and bioinformatics to introduce particpants to widely used languages such as R, and get them started in the analysis of their own omics data. For additional information and any collaboration requests, please contact us by email at [email protected] describing your needs, including, if data is already available, the underlying technology and experimental design. Members Prof Laurent Gatto Mr Theo Killian Dr Axelle Loriot Contact: [email protected] CBIO - de Duve Institute - UCLouvain Avenue Hippocrate, 75 - bte B1.74.10 1200 Brussels, Belgium -
DeiC – Danish e-Infrastructure Cooperation
DeiC – Danish e-Infrastructure Cooperation has the stated aim of supporting the development of Denmark as an eScience nation through the delivery of e-infrastructure (computing, data warehousing, network connections and auxiliary services), guidance, and initiatives at national level. DeiC is a...
2 training materialsDeiC – Danish e-Infrastructure Cooperation https://vidensportal.deic.dk https://tess.elixir-europe.org/content_providers/deic-danish-e-infrastructure-cooperation DeiC – Danish e-Infrastructure Cooperation has the stated aim of supporting the development of Denmark as an eScience nation through the delivery of e-infrastructure (computing, data warehousing, network connections and auxiliary services), guidance, and initiatives at national level. DeiC is a virtual unit under the Danish Ministry of Higher Education and Science and the result of an agreement concluded between the eight Danish universities and the Danish Agency for Science and Higher Education. For details, see www.deic.dk. /system/content_providers/images/000/000/117/original/deic-logo.jpg?1568809393 -
QCIF
QCIF (Queensland Cyber Infrastructure Foundation) provides high-performance services, infrastructure and expertise to enable excellence in data-centric, collaborative research.
QCIF operates with its members and partners delivering high-value services to researchers throughout Queensland and...
0 events (2 past events)QCIF https://www.qcif.edu.au https://861596.fd6au1zn.asia/content_providers/qcif QCIF (Queensland Cyber Infrastructure Foundation) provides high-performance services, infrastructure and expertise to enable excellence in data-centric, collaborative research. QCIF operates with its members and partners delivering high-value services to researchers throughout Queensland and Australia. QCIF’s members are six Queensland universities: The University of Queensland, Queensland University of Technology, Griffith University, James Cook University, CQUniversity, and the University of Southern Queensland. The University of the Sunshine Coast is an associate member. /system/content_providers/images/000/000/122/original/QCIF_RGB_small.jpg?1579735144 -
UCL Engineering
Our research is shaping the future of engineering - and of society. Find out more about the impact we make.
0 events (2 past events)UCL Engineering https://bit.ly/3OzH0Vu https://tess.elixir-europe.org/content_providers/ucl-engineering Our research is shaping the future of engineering - and of society. Find out more about the impact we make. /system/content_providers/images/000/000/646/original/UCL_logo.png?1658853660 -
ELIXIR AAI
The ELIXIR Authentication and Authorization Infrastructure (AAI) lets you sign in to a range of services with the same account. You can use your university or institute account, or an account with a with a company like Google, Apple or LinkedIn.
2 training materialsELIXIR AAI https://elixir-europe.org/platforms/compute/aai https://tess.elixir-europe.org/content_providers/elixir-aai The ELIXIR Authentication and Authorization Infrastructure (AAI) lets you sign in to a range of services with the same account. You can use your university or institute account, or an account with a with a company like Google, Apple or LinkedIn.