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Carpentries style curriculum
Introduction to Workflows with Common Workflow Language
• beginnerWorkflows RNA-Seq analysis cwl commonwl sciworkflows workflows -
2
Training materials
Containers & Workflow pipelines workshop
•• intermediateContainers Nextflow -
3
Presentation, course materials
Introduction to Nextflow workshop
• beginnerWorkflows Nextflow DSL2 -
4
Training materials
FAIR principles applied to bioinformatics
•• intermediateFAIR Reproducible Science Open science Data analysis Data processing -
5
Slides, course materials
Introduction to using cloud and containers for training - OpenStack and Docker oriented view
Cloud computing Containers
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6
Slides
Galaxy Server administration - Docker and Galaxy
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7
Docker for Beginners
Docker
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8
Introduction to using containers - OpenShift, Kubernetes and Docker oriented view
• beginnerContainers Kubernetes Cloud computing -
9
Online material, hands-on tutorial
Introduction to Docker and Singularity
• beginnerReproducibility Container Singularity -
10
Training materials
NBIS Reproducible research course
data management Reproducibility Data analysis
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